Jatropha Genome Database

JcCB0082981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082981.10 - phase: 0 /pseudo/partial
         (974 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g077640.1 FY-rich, C-terminal; WD40-like chr08_pseudo...   232   7e-61

>IMGA|Medtr8g077640.1 FY-rich, C-terminal; WD40-like
           chr08_pseudomolecule_IMGAG_V3 15506587-15518826 E
           EGN_Mt090430 20090702
          Length = 1262

 Score =  232 bits (591), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 232/452 (51%), Gaps = 45/452 (9%)

Query: 1   KKEMYLQRGKDRYPYPVGYQARRAYNGGTYKMEIQEGHKGPLFVITSADGHLCSGQTADI 60
           KK     RGKDRYPYPVGYQA RA+NG TYKMEI EG  GP F+I+S DG+  +G+T D 
Sbjct: 41  KKYWSSSRGKDRYPYPVGYQAVRAHNGTTYKMEILEGDNGPKFLISSDDGNSATGKTPDS 100

Query: 61  AWDKFQKKGCPRMKIWHGKRFLCKIDGIEFFGFRNPFVQRLLRELVANVNGVAEHSLLPS 120
           AW++FQKKG  RMKIWHGKR   K+ G+E FGF+N F+QRLLRELV+++NG+ + SL+ S
Sbjct: 101 AWEEFQKKGYNRMKIWHGKRLSSKMYGLELFGFKNQFIQRLLRELVSDINGIVDRSLVSS 160

Query: 121 GTCNGASNMEHNNQCQDSHTCSDLLPYLSRPQVTGKRSKRFKIIDPKSLGIDGLKRLRAG 180
             CN  S  +H++   +  T SDLL    RP VT KR+ R ++ + +S       R R  
Sbjct: 161 NLCNEVSKTQHDDCHPNVGTSSDLLLSQKRPGVTRKRT-RCELKNKES-----NVRSRPQ 214

Query: 181 NLKCIVEPSNSINGNPKQGSSSSPSTCSFHLKDDSCRLLGASSTGVQSDYATGGENSHLA 240
           +L+     ++        G  S+ S      KD +   +  SST           N   +
Sbjct: 215 SLELACSKASDAKNETTVGQGSTTSNNGSEDKDATYNQIDVSSTLPIMSSVGKITNCISS 274

Query: 241 KDGLSSKSVDYSDHLGEKTVPVYEESKLASSEDNKST-VVQKFSAEENPHQWRSKL*VHY 299
           ++GL    +D S+      VP    +    S + K+T   +  S E+  H+       H 
Sbjct: 275 QNGLLLNPIDISEDKKGGAVPAESPTGFIDSANKKTTERTENLSTEKLLHR------SHD 328

Query: 300 VQKNLQASMILIYGLLTH*TLCKE-------EIMATEVADSEELANKPYPK--------- 343
           V+  +    +     +   +  KE       ++ A +  D +E  +   P          
Sbjct: 329 VEMKMSNLSVTAEDDIVMQSRSKESQGCIGIDLWAPDSVDLQENISDSAPSNLVKNTDSK 388

Query: 344 ---------------EEMGTSSSHLSSERSDFDSVGQDIAKSMMTVLLPQAIPLLKKTSS 388
                          EEM  S S+ SSE++ F+S GQD+AKSMM++LLPQA+PLL+  S+
Sbjct: 389 PACEVTSEDLLNSKHEEMLRSDSNPSSEKNHFNSAGQDVAKSMMSLLLPQAVPLLRNVST 448

Query: 389 KKKRIVSPPENLPSIPA-LHEENNETGFFVEA 419
            +K  + P + LPS+     +E NE G  ++ 
Sbjct: 449 DEKLTLIPSDILPSMATNSKDEQNEVGCVLDV 480



 Score =  209 bits (533), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 107/220 (48%), Positives = 142/220 (64%)

Query: 754  NPGSEKQGTLFCHNKTLISKEVQGSSELKKQRNLELNNELEDAVEFLGCYFHPMPVLLLL 813
            NP S+      C NK    KE Q  SE   QRN EL N L   V+F+G Y HPMPV  LL
Sbjct: 795  NPSSQNPNPFSCENKCSGDKEAQLFSEPMVQRNQELKNNLNSNVKFVGSYMHPMPVSSLL 854

Query: 814  LSRKGNEIYICAVCGLPVDKNRTLFLYKLAVEEPKIGCPYFVGHTSVAWPSSTDIFGREI 873
            L  + +EI+IC +CGL  +++RTLF YK+A++EP  GCP  + HT V  P     F RE 
Sbjct: 855  LRTREDEIHICVLCGLLTEQHRTLFTYKVAIKEPNFGCPSVMAHTPVMLPDPKYNFMREN 914

Query: 874  AFERSGLQLTPDGKCLVLLGNTRTPYCREGRIDCLCSTCTTDCNENSTVKIVQVQDGYVS 933
              ER+G+ LTPDG+ +VL+G+ +TP CREG+ DC CSTCT+ C++ + +KIV V+ G  S
Sbjct: 915  MLERTGVDLTPDGRYIVLIGSIKTPNCREGKTDCCCSTCTSVCSKKNALKIVHVESGSAS 974

Query: 934  VLLKLRTTDSLQCILVCEPDHIIAAGESRGLNLWTMNSTW 973
            V+  L   + L CILVCEP+ +++ GES  L +W MNSTW
Sbjct: 975  VMATLEAVEDLHCILVCEPNQLVSVGESGRLQVWVMNSTW 1014