Jatropha Genome Database

JcCB0082871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082871.10 - phase: 2 /partial
         (301 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109510.1 transducin family protein chr08_pseudomolec...   188   2e-48
IMGA|Medtr7g015120.1 WD40-like chr07_pseudomolecule_IMGAG_V3 373...    98   4e-21
IMGA|Medtr1g039650.1 WD repeat-containing protein 18, related ch...    80   1e-15
IMGA|Medtr7g015120.2 WD40-like chr07_pseudomolecule_IMGAG_V3 373...    69   2e-12

>IMGA|Medtr8g109510.1 transducin family protein
           chr08_pseudomolecule_IMGAG_V3 24576369-24571666 E
           EGN_Mt090430 20090702
          Length = 471

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/294 (38%), Positives = 151/294 (51%), Gaps = 23/294 (7%)

Query: 5   SCTTDGMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMI 64
           SCT +G+YL GGA SG AYIW+V +G LLKTW AH+KS+  +IF              MI
Sbjct: 93  SCTKEGIYLVGGALSGTAYIWDVTSGKLLKTWTAHYKSVDHIIFSNDDSLLISGSIDGMI 152

Query: 65  CVWSMLSLLDMGNXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXDATCKAWDLV 121
           CVWSM+SLLD+                                       D TCK WD +
Sbjct: 153 CVWSMISLLDVEETESSNPLLHCLSGHMSSITGLLATTCSCFSILISSSLDGTCKVWDFI 212

Query: 122 SGTLVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDP-FVVAEDQLVVL 180
           +G L+QTQ YP+ IT I LH  E  LF G+ +G I V++L+I L   P F++ ED+ + L
Sbjct: 213 TGRLMQTQGYPLAITCITLHQGEHILFCGAKNGTIIVNMLDIGLEQGPNFMIREDKSLEL 272

Query: 181 EGHKGSITALTFSTLGLISASEDCTISLWDAVSWVPIQKFN------------------P 222
            GH G+ITA+  S   LIS+SEDCTI +WD + W   ++F+                   
Sbjct: 273 TGHMGAITAMASSRTCLISSSEDCTICIWDVIGWTITRRFDLQKWKVTNLVVIPRSPAFS 332

Query: 223 SSNHQRVSYKFRVSLLHKCPLPAANSSKGTVTLLRSCSSAEDNQTSPDFITTSL 276
           +SN+ R   ++ VS L KCPL  +   K T TLL  C   ++ QT  D  +T L
Sbjct: 333 ASNNTRELKRYIVSPLDKCPLQISR-YKETTTLLSLCRLFKEKQTYIDLRSTGL 385


>IMGA|Medtr7g015120.1 WD40-like chr07_pseudomolecule_IMGAG_V3
           3736112-3731320 F EGN_Mt090430 20090702
          Length = 441

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 93/221 (42%), Gaps = 15/221 (6%)

Query: 10  GMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMICVWSM 69
           G YL GG  SG  Y+WEV  G LLK W  H+ ++ C++F               + VWS+
Sbjct: 91  GTYLVGGGLSGEIYLWEVETGRLLKKWHGHNTAVTCLVFSEDDSLLISGFKNGSVRVWSL 150

Query: 70  LSLLDMGNXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXDATCKAWDLVSGTL 125
           L + D                                         D TCK W L +G L
Sbjct: 151 LMIFDDVRRREASKIYEYSFSDHTLCVNDVVIGYGGCNAIIASASDDRTCKVWTLSNGML 210

Query: 126 VQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVVLEG--- 182
            +   +P  I  IAL P E  L+AGS DG+IFV+ LN        +   DQ+  + G   
Sbjct: 211 QRNIVFPSKIKAIALDPAEHVLYAGSEDGKIFVAALNTTR-----ITTNDQVSYITGSFS 265

Query: 183 -HKGSITALTFSTLG--LISASEDCTISLWDAVSWVPIQKF 220
            H  ++T L +S     LIS S+D  + +W+A +   I+ F
Sbjct: 266 NHSKAVTCLAYSAAENFLISGSDDGIVRVWNASTHNIIRVF 306


>IMGA|Medtr1g039650.1 WD repeat-containing protein 18, related
           chr01_pseudomolecule_IMGAG_V3 9077464-9081486 E
           EGN_Mt090430 20090702
          Length = 339

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 6/200 (3%)

Query: 27  VANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMICVWSMLSLLD----MGNXXXXX 82
           V  G LLK W AH +++ C++F               + VWS+ SL D            
Sbjct: 6   VETGRLLKKWHAHLRAVTCLVFSDDDSLLISGSEDGYVRVWSLFSLFDDLRSREEKNLYE 65

Query: 83  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATCKAWDLVSGTLVQTQDYPVGITTIALHP 142
                                        D TCK W L  GTL+++  +P  I  I L P
Sbjct: 66  YSFSEHTMRVTDVVIGNGGCNAIIVSASDDRTCKVWSLSRGTLLRSIVFPSVINAIVLDP 125

Query: 143 TEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVVLEGHKGSITALTFSTLG--LISA 200
            E   +AGS DG+IF++ LN E +          +     H  ++T L +S     LIS 
Sbjct: 126 AEHVFYAGSSDGKIFIAALNTERITTIDNYGMHIIGSFSNHSKAVTCLAYSKGRNLLISG 185

Query: 201 SEDCTISLWDAVSWVPIQKF 220
           SED  + +W+A +   ++ F
Sbjct: 186 SEDGIVRVWNAKTHNIVRMF 205


>IMGA|Medtr7g015120.2 WD40-like chr07_pseudomolecule_IMGAG_V3
           3736112-3731320 F EGN_Mt090430 20090702
          Length = 299

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 11/115 (9%)

Query: 112 DATCKAWDLVSGTLVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFV 171
           D TCK W L +G L +   +P  I  IAL P E  L+AGS DG+IFV+ LN        +
Sbjct: 55  DRTCKVWTLSNGMLQRNIVFPSKIKAIALDPAEHVLYAGSEDGKIFVAALNT-----TRI 109

Query: 172 VAEDQLVVLEG----HKGSITALTFSTLG--LISASEDCTISLWDAVSWVPIQKF 220
              DQ+  + G    H  ++T L +S     LIS S+D  + +W+A +   I+ F
Sbjct: 110 TTNDQVSYITGSFSNHSKAVTCLAYSAAENFLISGSDDGIVRVWNASTHNIIRVF 164