Jatropha Genome Database

JcCB0082241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082241.10 + phase: 0 /pseudo/partial
         (243 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g156420.1 ER lumen protein retaining receptor; Orn/DA...   354   2e-98
IMGA|Medtr4g135750.1 ER lumen protein retaining receptor chr04_p...    78   3e-15

>IMGA|Medtr3g156420.1 ER lumen protein retaining receptor;
           Orn/DAP/Arg decarboxylase 2
           chr03_pseudomolecule_IMGAG_V3 41010513-41005039 E
           EGN_Mt090430 20090702
          Length = 493

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/198 (86%), Positives = 177/198 (89%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           AGLSLKSQELTA+FLAVRLYCSFVMEYDIH            WVIYMIRFKL+SSYMD K
Sbjct: 74  AGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDTATLGTTLWVIYMIRFKLKSSYMDAK 133

Query: 105 DNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF 164
           DN AIYYVVIPCAVLS LIHP+T HH  NRI WAFCVYLEAVSVLPQLRVMQNTKIVEPF
Sbjct: 134 DNLAIYYVVIPCAVLSLLIHPTTRHHYANRILWAFCVYLEAVSVLPQLRVMQNTKIVEPF 193

Query: 165 TAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILADFCYY 224
           TAHYVFALGVARFL+CAHWVLQVLDTRGRLLTALGYGLWP MVLLSE+VQT ILADFCYY
Sbjct: 194 TAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTSILADFCYY 253

Query: 225 YVKSLVGGQLVLRLPSGV 242
           Y+KSLVGGQLVLRLPSGV
Sbjct: 254 YIKSLVGGQLVLRLPSGV 271


>IMGA|Medtr4g135750.1 ER lumen protein retaining receptor
           chr04_pseudomolecule_IMGAG_V3 33084692-33080004 E
           EGN_Mt090430 20090702
          Length = 215

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 95/201 (47%), Gaps = 20/201 (9%)

Query: 45  AGLSLKSQELTALFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFK--LRSS 99
           +G+S K+QEL A+    R   L+  F+  Y+               +++ IR    ++ S
Sbjct: 30  SGVSRKTQELYAIVFLARYLDLFTDFISVYNTFMKIVFIASSLA--IVWCIRVHPMVKRS 87

Query: 100 YMDDKDNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTK 159
           Y  D D F  Y +V    +L+  +H          I WAF +YLEAV++LPQL ++Q + 
Sbjct: 88  YDKDLDTFRHYLLVAASFLLALFLH---EKFTFLEIFWAFSIYLEAVAILPQLVLLQRSG 144

Query: 160 IVEPFTAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILA 219
            V+  T  YVF LG  R L   +W+        R LT   +  W   V  S VVQT + A
Sbjct: 145 NVDNLTGQYVFFLGAYRGLYILNWIY-------RYLTEPRFTRWIACV--SGVVQTALYA 195

Query: 220 DFCYYYVKSLVGGQLVLRLPS 240
           DF YYY  S       L+LP+
Sbjct: 196 DFFYYYFISWKNNS-KLKLPA 215