Jatropha Genome Database

JcCB0081401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0081401.10 + phase: 0 /partial
         (218 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g080490.1 UbiA prenyltransferase chr07_pseudomolecule...   176   7e-45

>IMGA|Medtr7g080490.1 UbiA prenyltransferase
           chr07_pseudomolecule_IMGAG_V3 17129933-17134686 E
           EGN_Mt090430 20090702
          Length = 400

 Score =  176 bits (447), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/220 (49%), Positives = 128/220 (58%), Gaps = 22/220 (10%)

Query: 1   MTSFLLSRASWHTTRRALKYCLSSSL---PIFNNIAISSSNRTLETNPNF-INIFIPTLN 56
           M S L+SRA W   RR LK  L SS     IFN +  S        +PN  ++ F P+  
Sbjct: 1   MASALISRA-W---RRFLKPSLLSSGFTPSIFNPLISSQQCVDRYPSPNVSVSPFKPSQF 56

Query: 57  QFIQSYHCTSLGFKISHENQNPNPLNLKFFREIST----LSSSKNNENQENGGSSKEGHQ 112
                  C S+G          +  N +    IST    L   K N+NQ +   S  G  
Sbjct: 57  VIYNLEFCRSVG----------SLSNFQLVVHISTSPSRLGQDKENKNQSSSNVSSGGDI 106

Query: 113 SWIDLYLPRQARPYARLARLDKPIGTWLLTWPCMWSISLAASPGHLPDLKMMXXXXXXXX 172
           SW+DLYLPR  +PYARLARLDKPIGTWLL WPC+WSI+LAA PGHLPD KM+        
Sbjct: 107 SWVDLYLPRLVQPYARLARLDKPIGTWLLLWPCVWSITLAAPPGHLPDFKMLALFGCGAF 166

Query: 173 XXXXXXCTINDLLDRDIDTKVERTKLRPIASGLLTPFQGL 212
                 CTINDL+DRDIDTKVERTKLRP+ASG+LTPFQGL
Sbjct: 167 LLRGAGCTINDLIDRDIDTKVERTKLRPVASGILTPFQGL 206