Jatropha Genome Database

JcCB0080851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080851.10 + phase: 0 /partial
         (156 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g038230.1 hypothetical protein chr05_pseudomolecule_I...    47   4e-06

>IMGA|Medtr5g038230.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 16143894-16147809 E
           EGN_Mt090430 20090702
          Length = 192

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 45/53 (84%)

Query: 104 VRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           ++F+Q++FKK++K+A++A RSVLP  IS +LV+F+V+G L+LA L V+KA LE
Sbjct: 96  IKFLQSMFKKMAKRAKKASRSVLPTVISPQLVSFAVDGTLLLATLSVVKALLE 148