Jatropha Genome Database

JcCB0080001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080001.10 - phase: 0 
         (303 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g147940.1 hypothetical protein chr03_pseudomolecule_I...   145   3e-35
IMGA|Medtr1g024750.1 hypothetical protein chr01_pseudomolecule_I...    97   7e-21

>IMGA|Medtr3g147940.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 38438655-38437536 E
           EGN_Mt090430 20090702
          Length = 295

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 141/269 (52%), Gaps = 19/269 (7%)

Query: 35  EFSFTISLHPSSTPVISDXXXXXXXXXXXXIDLSPADDIFFHGXXXXXXXXXXXXXXXXX 94
           EFSFTISLH +S+  I D            +DLSPADDIFFHG                 
Sbjct: 43  EFSFTISLHSNSSTTIHDKSKPPSPSLA--LDLSPADDIFFHGHLLPLHLLSHFPSSPRF 100

Query: 95  XINSLDSFTLPIKELLDDHQEANRINSSSSNTSQEXXXXXXXXXXXXXXXXXXDREATKT 154
             NS DSFTLPI+ELL D  E  R ++SS NTS                    ++    T
Sbjct: 101 STNSNDSFTLPIRELLQD--EKIRKDTSSCNTSHREDNINININNTRGVTKDENKS---T 155

Query: 155 KSKPKSFSLFGWRKGFXXXXXXXXXXXXXXXXXTFEVSHILKRYVRKVRPLLFFKGRRED 214
            +K  SFSLFG  KG                   +++   LK+Y++ V+    F+GRRE 
Sbjct: 156 NTKASSFSLFGSSKG----NHNNKEKHNKKKLVGYDMIQALKKYLKNVQ---LFRGRREK 208

Query: 215 HHLQLHRQSHSFSGNLSLRNKLELGRGRRGEYSAPASMRTSPTNSGLLVATA--TLPSST 272
           +    H +++S SGNL  +NK E+ RG RGEYSAPASMR SPTNSGLL+AT      SS+
Sbjct: 209 N--GFHGEAYSRSGNLIRKNKPEV-RGSRGEYSAPASMRASPTNSGLLLATGGSLSSSSS 265

Query: 273 SDSTMEELXXXXXXXXXHCKNSIAAEDKI 301
           ++S+MEEL         HCKNSIA EDK+
Sbjct: 266 NNSSMEELQAAIQAAIAHCKNSIAKEDKL 294


>IMGA|Medtr1g024750.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 5906346-5905453 E
           EGN_Mt090430 20090702
          Length = 297

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 14/122 (11%)

Query: 189 FEVSHILKRYVRKVRPLLFFKGRREDHHLQLHRQSHSFSG-NLS--LRNKLELGRG---R 242
           F+V H +K+Y+RKV+PL     +RE   ++  ++S+S+SG N++   RNK EL +G   +
Sbjct: 183 FDVLHAVKKYLRKVKPLF----KREK--IREQKKSYSYSGKNVTPRTRNKQELMKGWSMK 236

Query: 243 RGEY-SAPASMRTSPTNSGLLVATATLPSSTSDSTMEELXXXXXXXXXHCKNSIAAEDKI 301
            G+Y SAPASMRTSPTNSG+L AT  LP   SDS+MEEL         HCKNS + E+K+
Sbjct: 237 LGQYYSAPASMRTSPTNSGVLFATTPLP-PPSDSSMEELQAAIQSAIAHCKNSYSKEEKL 295

Query: 302 KC 303
            C
Sbjct: 296 NC 297



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 34  HEFSFTISLHPSST--PVISDXXXXXXXXXXXXIDLSPADDIFFHGXXXXXXXXX--XXX 89
           H+FSFTIS +  +T  P   +            +DLSPADDIFFHG              
Sbjct: 30  HDFSFTISHNSFNTTFPNNHNKSKLSSHNSFTALDLSPADDIFFHGHLLPLQILSHFPSS 89

Query: 90  XXXXXXINSLDSFTLPIKELLDDHQEAN 117
                  NS+DSFTLPI+EL  +  + N
Sbjct: 90  ISPRSSTNSMDSFTLPIRELFSEDDDEN 117