Jatropha Genome Database

JcCB0079761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0079761.10 + phase: 2 /pseudo/partial
         (165 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g090030.1 Origin recognition complex subunit 3, relat...   171   1e-43

>IMGA|Medtr5g090030.1 Origin recognition complex subunit 3, related
           chr05_pseudomolecule_IMGAG_V3 35051753-35048920 H
           EGN_Mt090430 20090702
          Length = 176

 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 100/127 (78%)

Query: 1   DYMQPIESIAFHEIVCFKHVEQLQVALIGDPRKRIQVDLLEFHNIIRCSCCSRSGNSLLP 60
           +Y++PIE + F+EI CFK+VE+LQ  LIGDPR+RIQVDLLEFHNI+ CSCC++SG  LLP
Sbjct: 16  NYLRPIEGMPFNEIFCFKNVEKLQSVLIGDPRRRIQVDLLEFHNILCCSCCNKSGKGLLP 75

Query: 61  SMNDSSIMYSLAREQDDLINLHDWYQSFKLVILSSSNKGKHRTKHFPSPKKRKVATEAAK 120
           S +DSSIMYSLA+E  DLINLHDW+QSF+ ++L ++NK K ++K  P  KKRK    +A 
Sbjct: 76  SRHDSSIMYSLAQEHGDLINLHDWFQSFRTIVLQNTNKRKQKSKQTPLSKKRKEMNGSAD 135

Query: 121 PTEESIQ 127
             E SIQ
Sbjct: 136 QNEASIQ 142