Jatropha Genome Database

JcCB0078661.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078661.20 - phase: 0 
         (175 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g162790.1 Dehydrin chr03_pseudomolecule_IMGAG_V3 4259...    65   2e-11

>IMGA|Medtr3g162790.1 Dehydrin chr03_pseudomolecule_IMGAG_V3
          42591227-42592123 F EGN_Mt090430 20090702
          Length = 196

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 34/35 (97%)

Query: 4  LRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGLA 38
          +RDE+GNPIQLTDE GNPV+LTDEHGNP+H+TG+A
Sbjct: 6  IRDEHGNPIQLTDELGNPVKLTDEHGNPIHLTGVA 40