Jatropha Genome Database

JcCB0078191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078191.10 + phase: 1 /partial/short
         (34 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g017350.1 hypothetical protein chr05_pseudomolecule_I...    60   3e-10
IMGA|CU571152_20.1 hypothetical protein CU571152.5 88856-90382 E...    55   1e-08

>IMGA|Medtr5g017350.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 6203631-6200809 E
           EGN_Mt090430 20090702
          Length = 393

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/31 (90%), Positives = 31/31 (100%)

Query: 2   RFSDSLRKAGWSSEEVSDALGFDFRPEKEKE 32
           RFSDSLRKAGWSSEEVS+ALGFDFRPEKE++
Sbjct: 342 RFSDSLRKAGWSSEEVSEALGFDFRPEKERK 372


>IMGA|CU571152_20.1 hypothetical protein CU571152.5 88856-90382 E
           EGN_Mt090430 20090702
          Length = 401

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 27/27 (100%)

Query: 1   DRFSDSLRKAGWSSEEVSDALGFDFRP 27
           DRFSDSLRK+GWSSEEVSDALGFDF+P
Sbjct: 346 DRFSDSLRKSGWSSEEVSDALGFDFQP 372