Jatropha Genome Database

JcCB0078111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078111.10 - phase: 0 /partial
         (316 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g107490.1 Dcp1-like decapping chr02_pseudomolecule_IM...   330   6e-91

>IMGA|Medtr2g107490.1 Dcp1-like decapping
           chr02_pseudomolecule_IMGAG_V3 25306326-25300484 E
           EGN_Mt090430 20090702
          Length = 366

 Score =  330 bits (846), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 182/315 (57%), Positives = 204/315 (64%), Gaps = 7/315 (2%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQ GKLMPNLDQQSTK+LNLTVLQRIDPF+EEILITAAHVTFYEFNI+ +QWSRKDVEG
Sbjct: 1   MSQNGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYE+QVPYLLYRNAAQEVNGIWFYN+
Sbjct: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEIQVPYLLYRNAAQEVNGIWFYNA 120

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVIEGPLXXXXXXXXXXX 180
           RECEEVANLFSRILNAY              EFEELEAVP+M+V++GPL           
Sbjct: 121 RECEEVANLFSRILNAYAKVPPKLKVSSTKSEFEELEAVPTMAVMDGPLEPSSSITSNVA 180

Query: 181 XXXXXXX-XXXXNATMVIGSSAANLANSRQPYHSTATIPLS--THTPNVVSPPSHNPQIX 237
                       +A M IG++ +N   + QPY S+ATI  S  TH    V P    P + 
Sbjct: 181 DVPDDPSFINFFSAAMGIGNT-SNAPITGQPYQSSATISSSGPTHAATPVVP---LPTLQ 236

Query: 238 XXXXXXXXXXVAIHDAPDPISSSNRVTNLVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
                        HDAP+ I+SS++ TNLVK                             
Sbjct: 237 IPSLPTSTPFTPQHDAPESINSSSQATNLVKPSFFVPPLSSAAMMMPPVSSSIPTAPPLH 296

Query: 298 XXXXXQRPYGTPLLQ 312
                QRPYGTP+LQ
Sbjct: 297 PTGTVQRPYGTPMLQ 311