Jatropha Genome Database
- JcCB0077031.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0077031.10 - phase: 0 /TE
(1148 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 155 1e-37
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 148 1e-35
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 147 3e-35
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 145 1e-34
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 140 3e-33
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 127 4e-29
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 101 2e-21
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 78 3e-14
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 74 4e-13
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 62 1e-09
IMGA|Medtr5g089840.1 copia LTR rider, related chr05_pseudomolecu... 57 7e-08
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 55 2e-07
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 108/183 (59%), Gaps = 4/183 (2%)
Query: 807 EPESFEEAMGNEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFRIKQEEHS 866
EP S+EEA + W +AM E +LH++ T+ WV+++K +
Sbjct: 335 EPNSYEEASMDP---AWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADG 391
Query: 867 SQPRFKARLVVKGFNQRKDIDFDEIFSPVVKMTSIQTVLGMAASFDLKIEQMDETTAFLH 926
S R+KARLVVKG+ Q ID+ E FSPVVKMT+++T++ AA I Q+D AFLH
Sbjct: 392 SVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLH 451
Query: 927 GDLEEEIYMEXPEGFIKKGREDCVCKLKKSLYGLKQALRQWYKKFESIMGEHGYRKTTSD 986
GDL EE+YM+ P G + +D VCKL KSLYGLKQA RQWY+K + GY + D
Sbjct: 452 GDLHEEVYMDIPPG-LATPHKDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHD 510
Query: 987 HCV 989
+ +
Sbjct: 511 YSL 513
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Query: 799 YVLTTDG-GEPESFEEAMGNEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWV 857
+ L+ D EP ++ EA + W +AMQ E+ +L T++ W+
Sbjct: 874 FALSLDSHTEPTTYAEASKFD---CWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWI 930
Query: 858 FRIKQEEHSSQPRFKARLVVKGFNQRKDIDFDEIFSPVVKMTSIQTVLGMAASFDLKIEQ 917
++IK S R+KARLV KG+NQ + +D+ + +SPV K+T+++T++ +A + I Q
Sbjct: 931 YKIKHHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQ 990
Query: 918 MDETTAFLHGDLEEEIYMEXPEGFIKKGREDCVCKLKKSLYGLKQALRQWYKKFESIMGE 977
+D AFLHGDL+E++YM P+G I + + VCKL KSLYGLKQA R+WY+K S++
Sbjct: 991 LDVNNAFLHGDLQEDVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVH 1049
Query: 978 HGYRKTTSDHCVSI 991
H Y ++TSDH + I
Sbjct: 1050 HHYLQSTSDHSLFI 1063
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Query: 797 NEYVLTTDG-GEPESFEEAMGNEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXX 855
+ YVL+ EP+++ EA N+H+ W +AMQ E+++L + T+
Sbjct: 855 SSYVLSLHTHNEPKTYAEA--NKHE-CWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCR 911
Query: 856 WVFRIKQEEHSSQPRFKARLVVKGFNQRKDIDFDEIFSPVVKMTSIQTVLGMAASFDLKI 915
WVF+IK+ S R+KARLV KG+ Q + +D+ + FSPV K+T+++ ++ +A+ +
Sbjct: 912 WVFKIKRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHL 971
Query: 916 EQMDETTAFLHGDLEEEIYMEXPEGFIKKGREDCVCKLKKSLYGLKQALRQWYKKFESIM 975
Q+D AFLHGDL+E +YM P G I + VCKL KSLYGLKQA R+WY K SI+
Sbjct: 972 HQLDVNNAFLHGDLQENVYMTLPPG-ISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSIL 1030
Query: 976 GEHGYRKTTSDHCV 989
+H Y + SDH +
Sbjct: 1031 LKHQYTQAHSDHSL 1044
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 179/391 (45%), Gaps = 46/391 (11%)
Query: 628 MILQKECGQERMFPMIICGCLAAKSSCIFLRMRGLSLMXCVFISYGQDQFGYRFFDSIQK 687
++L + +F + C C A+ +++ + +F+ Y GY FD +
Sbjct: 547 LVLHNKLPSLDLFKVFGCLCYASTLQNHRTKLQSRARK-SIFLGYQSGYKGYVLFDLTSR 605
Query: 688 KMIRSRDVVFVENQTIEDVEKTQKQAADRSEDDSTYVQIVPPATEQRQVGDEETXXXXXX 747
++ SR V F E + K + + D + Y + +Q + +
Sbjct: 606 EIFISRHVSFHET-----ILPYHKNPSSTTADWNYYPSSQSYSHDQSPNVNHQVHIPAVI 660
Query: 748 XXXXXXXXXYQNESEEDFDGVHVQPPAPEGSQTLRRSSRVR------QLY-------TRY 794
D +HV P RRS+RVR Q Y T Y
Sbjct: 661 DDILPSTHVLPPSPPYDSPPIHVSP---------RRSNRVRTAPLHLQDYVCNSVHSTTY 711
Query: 795 SANEYV----LTTDGG----------EPESFEEAMGNEHKRNWIEAMQDEMKSLHEDETF 840
+ Y+ ++T+ EP ++ EA ++ W +AMQ E+ +L + T+
Sbjct: 712 PLSHYINYNNISTNHASFISSLQTTPEPTTYVEASKHD---CWNKAMQAELLALEKTGTW 768
Query: 841 EXXXXXXXXXXXXXXWVFRIKQEEHSSQPRFKARLVVKGFNQRKDIDFDEIFSPVVKMTS 900
+ W++++K S R+KARLV KG+ Q + +D+ E +SPV K+T+
Sbjct: 769 DIVDLPAYVKPIGCRWIYKVKHNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTT 828
Query: 901 IQTVLGMAASFDLKIEQMDETTAFLHGDLEEEIYMEXPEGFIKKGREDCVCKLKKSLYGL 960
++ V+ +A+ + + Q+D AFLHG+L+E++YM P G I + VCKLKKSLYGL
Sbjct: 829 VRLVIALASIHNWHLHQLDVNNAFLHGELQEDVYMILPPG-INIAKPHQVCKLKKSLYGL 887
Query: 961 KQALRQWYKKFESIMGEHGYRKTTSDHCVSI 991
KQA RQWY+K S++ + Y + +SDH + I
Sbjct: 888 KQASRQWYEKLTSVLIQQHYIQASSDHSLFI 918
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 113/181 (62%), Gaps = 4/181 (2%)
Query: 807 EPESFEEAMGNEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFRIKQEEHS 866
EP+S+ EA + W AMQ E+++L + T++ W++++K
Sbjct: 892 EPKSYAEASKLD---CWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADG 948
Query: 867 SQPRFKARLVVKGFNQRKDIDFDEIFSPVVKMTSIQTVLGMAASFDLKIEQMDETTAFLH 926
+ R+KARLV KG+NQ + +D+ + +SPV K+T+++ V+ +++ + + Q+D AFLH
Sbjct: 949 TVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLH 1008
Query: 927 GDLEEEIYMEXPEGFIKKGREDCVCKLKKSLYGLKQALRQWYKKFESIMGEHGYRKTTSD 986
GDL+E++YM P G IK + + VCKL KSLYGLKQA R+WY+K S++ + Y + TSD
Sbjct: 1009 GDLQEDVYMMVPPG-IKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSD 1067
Query: 987 H 987
+
Sbjct: 1068 Y 1068
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Query: 827 MQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFRIKQEEHSSQPRFKARLVVKGFNQRKDI 886
MQ E+ +L + T++ W+F+IK S R+KARLV KG+NQ + +
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 887 DFDEIFSPVVKMTSIQTVLGMAASFDLKIEQMDETTAFLHGDLEEEIYMEXPEGFIKKGR 946
D+ + +SPV K+T+++ ++ +A+ + Q D AFLHG+L+E++YM P G +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSH 119
Query: 947 EDCVCKLKKSLYGLKQALRQWYKKFESIMGEHGYRKTTSDHCVSI 991
+D VCKL KSLYGL+QA +WY+K +I+ GY++ SD + I
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFI 164
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 807 EPESFEEAMGNEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFRIKQEEHS 866
EP+S+ EA E W +AMQ E+ +L T++ W++++K
Sbjct: 911 EPKSYTEANKFE---CWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADG 967
Query: 867 SQPRFKARLVVKGFNQRKDIDFDEIFSPVVKMTSIQTVLGMAASFDLKIEQMDETTAFLH 926
+ R+KARLV KG+NQ + +D+ + +SPV K T+I+ VL +A+ + + Q+D AFLH
Sbjct: 968 TIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLH 1027
Query: 927 GDLEEEIYMEXPEGFIKKGREDC 949
GDL+E++YM+ P G C
Sbjct: 1028 GDLQEDVYMDIPPGVSTNKPNQC 1050
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 28/142 (19%)
Query: 827 MQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFRIKQEEHSSQPRFKARLVVKGFNQRKDI 886
MQ E+ +L T++ W+++IK S R+KARLVVKG+NQ +
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 887 DFDEIFSPVVK----------------------------MTSIQTVLGMAASFDLKIEQM 918
D+ + +SPV K MT+++TV+ +A+ I ++
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 919 DETTAFLHGDLEEEIYMEXPEG 940
D +AFLHGDL+E++YM P+G
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQG 142
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 919 DETTAFLHGDLEEEIYMEXPEGFIKKGREDCVCKLKKSLYGLKQALRQWYKKFESIMGEH 978
D FLHGDL+E++YM P+G + R VCKL KSLYGLKQA R+W++K S++
Sbjct: 204 DANNTFLHGDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTI 262
Query: 979 GYRKTTSDH 987
G+ + ++DH
Sbjct: 263 GFVQASADH 271
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 806 GEPESFEEAMGNEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFRIKQEEH 865
EP+++ EA E W +AMQ E+ +L T++ W+++IK
Sbjct: 290 NEPKTYTEANKFE---CWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNAD 346
Query: 866 SSQPRFKARLVVKGFNQRKDIDFDEIFSPVVKMTSIQ 902
+ R+KARLV KG+NQ + +D+ + +SPV K T+I+
Sbjct: 347 DTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIR 383
>IMGA|Medtr5g089840.1 copia LTR rider, related
chr05_pseudomolecule_IMGAG_V3 34952559-34951978 H
EGN_Mt090430 20090702
Length = 154
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 80 RTLWDKLEXLYASKSGNNQLFYLTKLMNFKYQEDTSVADHLSEMQATIHHLSNIGIKFDD 139
+ LW+KLE LY +K +N+L + N + E T ++DHLS + + L +I +K DD
Sbjct: 19 KELWEKLEGLYQAKGISNRLLLKEQFHNLRMDEGTKISDHLSTLNNIVSELESIEVKIDD 78
Query: 140 KIFDLMVLASLPESWETLK 158
+ L ++ SLP S+ LK
Sbjct: 79 EDKTLRIILSLPPSYVHLK 97
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 918 MDETTAFLHGDLEEEIYMEXPEGFIKKGREDCVCKLKKSLYGLKQALRQWYKK 970
MD AFLHGDL+E++YM+ P GF VCKL+KS Y LK A + W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGF-HTSSSRLVCKLRKSQYVLKHAPQCWFAK 52