Jatropha Genome Database

JcCB0075891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075891.10 - phase: 0 /partial
         (143 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g013800.1 Targeting for Xklp2 chr01_pseudomolecule_IM...    72   1e-13

>IMGA|Medtr1g013800.1 Targeting for Xklp2
           chr01_pseudomolecule_IMGAG_V3 2698448-2692989 E
           EGN_Mt090430 20090702
          Length = 545

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 8/113 (7%)

Query: 19  VPIDGLETAHQNGVREQSPASGEEGVFSNSANGNIEKITVSTE---PDGNLDDASKLEDS 75
           +P DGL+  HQNGV ++   SGE+ V    +N     +TV+TE   PDGN ++ ++LE +
Sbjct: 94  LPADGLDDVHQNGVHDEPSNSGEDAV----SNDLDPHVTVNTETFVPDGNSENINQLEST 149

Query: 76  GTGNSYAVEFREGSNVHVGSNGFTGSKEGELKDGSQSEQVKSLKGPGKGKNEK 128
            TGNS   E  EGSN +V  +  T SKE E+K    +EQ ++ KGP K KN K
Sbjct: 150 ATGNSAMKEI-EGSNDNVDGSNLTVSKEKEVKIKVSTEQSRAQKGPVKNKNAK 201