Jatropha Genome Database

JcCB0075691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075691.10 + phase: 0 /pseudo
         (131 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g015680.1 Porin, eukaryotic type chr05_pseudomolecule...   128   8e-31
IMGA|Medtr7g008680.1 Porin, eukaryotic type chr07_pseudomolecule...   122   7e-29
IMGA|Medtr1g023140.1 Porin, eukaryotic type chr01_pseudomolecule...    87   3e-18
IMGA|Medtr8g128760.1 Porin, eukaryotic type chr08_pseudomolecule...    83   5e-17
IMGA|Medtr8g128760.2 Porin, eukaryotic type chr08_pseudomolecule...    68   1e-12

>IMGA|Medtr5g015680.1 Porin, eukaryotic type
           chr05_pseudomolecule_IMGAG_V3 5273619-5270332 E
           EGN_Mt090430 20090702
          Length = 276

 Score =  128 bits (321), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 84/105 (80%)

Query: 3   SKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHK 62
           SKGPGL+SD GKKA+D+L KDY++DQK  +SS + +GVA+TS  ++KGGLS GDV+ Q+K
Sbjct: 2   SKGPGLYSDIGKKAKDLLTKDYNSDQKLTVSSYSTTGVALTSTALKKGGLSTGDVAGQYK 61

Query: 63  FKNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
           +KN  +DVK++T S I TTL  TD   STK IAS+KLPDY+SGK+
Sbjct: 62  YKNTLIDVKIETASIINTTLTFTDLFPSTKTIASIKLPDYSSGKL 106


>IMGA|Medtr7g008680.1 Porin, eukaryotic type
           chr07_pseudomolecule_IMGAG_V3 1350752-1345913 E
           EGN_Mt090430 20090702
          Length = 277

 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 83/107 (77%)

Query: 1   MSSKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQ 60
           M++KGPGL++D GKKARD+LFKDY++DQKF +S+ + +GVAITS+  +KG L +GDV+TQ
Sbjct: 1   MAAKGPGLYTDIGKKARDLLFKDYNSDQKFTVSTYSPTGVAITSSGTKKGELFVGDVNTQ 60

Query: 61  HKFKNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
            K KN + D+K+DT+SN+ TT+ +T+     K I S K+PD  SGKV
Sbjct: 61  LKNKNYTADIKVDTESNLFTTITVTEPAPGVKAIISCKVPDPASGKV 107


>IMGA|Medtr1g023140.1 Porin, eukaryotic type
          chr01_pseudomolecule_IMGAG_V3 5044928-5044496 E
          EGN_Mt090430 20090702
          Length = 79

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 56/78 (71%)

Query: 1  MSSKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQ 60
          MSSKGPGLFSD GKK+RD+L KDY++DQK  ISS   SG+ + S +++  GLS GDV+ Q
Sbjct: 1  MSSKGPGLFSDIGKKSRDILTKDYNSDQKLTISSSTNSGLDLNSTLLKSRGLSSGDVAAQ 60

Query: 61 HKFKNGSLDVKLDTQSNI 78
           K  N +L  K+DT S +
Sbjct: 61 FKHNNKTLHFKVDTDSTV 78


>IMGA|Medtr8g128760.1 Porin, eukaryotic type
           chr08_pseudomolecule_IMGAG_V3 30206409-30211134 F
           EGN_Mt090430 20090702
          Length = 279

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 71/107 (66%), Gaps = 2/107 (1%)

Query: 3   SKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHK 62
           + GP  FS+ GK+ARD+L+KDY+ D KF++S  + +G+ +T+  +++    +GD++T +K
Sbjct: 2   ANGPAPFSEIGKRARDLLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYK 61

Query: 63  FKNGSLDVKLDTQSNILTTLRLTD--FPSSTKVIASLKLPDYNSGKV 107
             N ++DVK++T SN+ T + L D     S KV  S  +PD+ SGK+
Sbjct: 62  SGNVTVDVKVNTDSNVSTKVTLNDVSLSHSKKVALSFNIPDHKSGKL 108


>IMGA|Medtr8g128760.2 Porin, eukaryotic type
          chr08_pseudomolecule_IMGAG_V3 30206409-30208570 F
          EGN_Mt090430 20090702
          Length = 94

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 55/76 (72%)

Query: 3  SKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHK 62
          + GP  FS+ GK+ARD+L+KDY+ D KF++S  + +G+ +T+  +++    +GD++T +K
Sbjct: 2  ANGPAPFSEIGKRARDLLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDKFFVGDLNTLYK 61

Query: 63 FKNGSLDVKLDTQSNI 78
            N ++DVK++T SN+
Sbjct: 62 SGNVTVDVKVNTDSNV 77