Jatropha Genome Database

JcCB0075571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075571.10 - phase: 0 /partial
         (700 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g140450.1 early flowering 3, related chr03_pseudomole...   197   2e-50

>IMGA|Medtr3g140450.1 early flowering 3, related
           chr03_pseudomolecule_IMGAG_V3 36337998-36332692 E
           EGN_Mt090430 20090702
          Length = 688

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 181/337 (53%), Gaps = 20/337 (5%)

Query: 367 LQVGNVQRRDDVSKTSMMDSVSAFGITSDNVIRVIGEGQFWEARRAIVKQQREFKIQVFE 426
           +  GN+ + D++SK S ++ +S   I+ D+V+ +IG+ QFW+AR+AI  QQR F +QVFE
Sbjct: 291 IHSGNLNKNDNISKISRVEDLSTLKISPDDVVAIIGQKQFWKARKAIANQQRVFAVQVFE 350

Query: 427 LHRLIKVQMLIAGSPDLLLEDNIYLAKASLEVSPVKKVASENAREQPPLIDKQKDV-SQK 485
           LHRLIKVQ LIAGSPDLL ED  +L K+  + S  KK+A E    +P L + ++ V S+ 
Sbjct: 351 LHRLIKVQQLIAGSPDLLFEDGAFLGKSLPDGSTPKKLALEYV-VKPRLQNLKRKVDSEN 409

Query: 486 PYPSAEFADENAVVKLPLPHVNNETSKGLLTQQSNDGSHSEGVLLSPIAANTRQSPWCFP 545
              + E + ENAV K  +  V N +     T  + +  H        +AA     PW F 
Sbjct: 410 VNQNMECSAENAVGKTSISSVKNGSHLSSSTPFAGNPHHGN------MAAENGMGPWGFN 463

Query: 546 PQ-GNQWLVPVMSHSEGLVYKPYAGPCPPTAGFIAPVYGKCGPMNLPAGGGDFLNAACGV 604
              G+QWL+PVMS SEGLVYKPY GP     GF    YG  GP   P   G F+N + G+
Sbjct: 464 QSPGHQWLIPVMSPSEGLVYKPYPGP-----GFTGTNYGGSGPFGAPPSCGTFMNPSYGM 518

Query: 605 QQGIGILPMIPPLGQTYFPPH-AMPVMSPSISVSAVELVTPFIAPPSKDNQSSAGDIKFA 663
                  P        Y+PP+ +MP M  + S S VE V  F A   +    S G+    
Sbjct: 519 PPPPETPPG----SHAYYPPYGSMPFMKAAASESVVEHVNQFSA-RVQSRHLSEGEADCN 573

Query: 664 FPHQSSCNMLSQMSRVILCGGKFQASKESEVQESTAS 700
             +QSSCN+  Q +         Q SKE E+Q STAS
Sbjct: 574 KHNQSSCNLPVQRNGATTHVMHHQRSKEFELQMSTAS 610



 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 1  MRGPKDEEKIMSPIFPRLHVNDTEKGGPKAPPRNKMALYEQLSIPSQRF 49
          M+   D+EK+M P+FPRLHV DTEKGGP+APPRNKMALYEQ SIPSQRF
Sbjct: 1  MKRGNDDEKVMGPLFPRLHVGDTEKGGPRAPPRNKMALYEQFSIPSQRF 49