Jatropha Genome Database

JcCB0075081.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075081.30 - phase: 0 /partial
         (119 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099360.1 Zinc finger, RING-type chr01_pseudomolecule...   135   5e-33

>IMGA|Medtr1g099360.1 Zinc finger, RING-type
           chr01_pseudomolecule_IMGAG_V3 20287188-20289387 E
           EGN_Mt090430 20090702
          Length = 269

 Score =  135 bits (340), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 83/119 (69%), Gaps = 1/119 (0%)

Query: 1   EENVDIIIHHILGVVDSFLKRSNQLHEMMTSETKQEEFKTLVCDAARPFLAARTDRFVNE 60
           EE+VDII+HHI GVV +      + H +   E KQEEF   V +AARPFL ARTDRFV E
Sbjct: 152 EEDVDIIVHHIFGVVKTSWTGEQKSH-IKEPEKKQEEFMMSVSEAARPFLGARTDRFVYE 210

Query: 61  LELFLASGFNIEAYDDVYIQQLGWNTPGATGESADVEPSVAIPAVPYLYIFDDDSDETD 119
           ++LFLASG NIEAYD VYIQ+LGW++PG   E +  E       +PYLYIFDDDSD T+
Sbjct: 211 IQLFLASGLNIEAYDAVYIQRLGWSSPGENTEVSQNELVDRTTVIPYLYIFDDDSDGTE 269