Jatropha Genome Database

JcCB0074501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0074501.10 + phase: 2 /partial
         (270 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g008870.1 WD-40 repeat family protein, related chr01_...   191   4e-49
IMGA|Medtr4g142410.1 WD-40 repeat family protein chr04_pseudomol...   139   1e-33
IMGA|Medtr4g142040.1 WD-40 repeat family protein chr04_pseudomol...   139   1e-33
IMGA|Medtr3g143870.1 WD40-like chr03_pseudomolecule_IMGAG_V3 371...   137   5e-33
IMGA|Medtr7g067570.1 WD40-like chr07_pseudomolecule_IMGAG_V3 136...   112   3e-25

>IMGA|Medtr1g008870.1 WD-40 repeat family protein, related
           chr01_pseudomolecule_IMGAG_V3 939949-943595 E
           EGN_Mt090430 20090702
          Length = 709

 Score =  191 bits (484), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 155/258 (60%), Gaps = 25/258 (9%)

Query: 15  SDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYRG 74
           SD +L++ +Q CL GKKKS+ + ITGFQ+   D +++MVT  DS+VRI++G++V+ K++G
Sbjct: 475 SDNQLRMQSQLCLLGKKKSSGRGITGFQFLPQDFNKVMVTCDDSQVRIIEGLNVVEKFKG 534

Query: 75  IHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWACEHFFSNNASVA 134
           + NAGS +SA FTS G HI+SA EDSN+Y+WN +  +    + K   +CE FFS NASVA
Sbjct: 535 L-NAGSLMSASFTSDGKHILSACEDSNVYLWNVSDNESRSTKAKKIKSCERFFS-NASVA 592

Query: 135 IPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXXXXXXXXH 194
           +PW GL   N                   N +++ V  +    + C              
Sbjct: 593 VPWGGLKSDNIE-----------------NSKKLDVLNKRPPQAVC---LDPPSSFSLSQ 632

Query: 195 GFFSESLPKGSATWPEENLPSSLSMSPKMFKSQ--YKFLRTSYQSVHGSPHAWNLAIVTA 252
            F+  S+PKGSAT+PEE LP+S   S K    +  YKFL++S +S     HAW L IVTA
Sbjct: 633 DFYLNSIPKGSATYPEEKLPTSSPKSKKSSLHKSAYKFLKSSCKSTSNC-HAWGLVIVTA 691

Query: 253 GWDGRIRWFQNYGLPVRL 270
           GWDGRI+ F NYGLPV L
Sbjct: 692 GWDGRIKSFHNYGLPVLL 709


>IMGA|Medtr4g142410.1 WD-40 repeat family protein
           chr04_pseudomolecule_IMGAG_V3 35429460-35424793 E
           EGN_Mt090430 20090702
          Length = 645

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 144/271 (53%), Gaps = 26/271 (9%)

Query: 7   TNWCILHGSDGR-LQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDG 65
           T  C  + + G+  QL  Q  + GKKK++  +ITG Q+F ++  R+M+TS DSK+ ILD 
Sbjct: 394 TGTCRFYVASGKYFQLEGQIDIPGKKKASGNKITGIQFFQNNCQRIMITSEDSKICILDQ 453

Query: 66  VDVICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNY-AIKDGPVPRVKTNWACE 124
            +++ KY+G+  +GSQ+S  FTS G HIIS  EDS++Y+WN+   K G   + K++++CE
Sbjct: 454 TEIVQKYKGLPWSGSQMSGSFTSSGKHIISVGEDSHVYIWNFNDFKSGSSKKTKSDYSCE 513

Query: 125 HFFSNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXX 184
           +F     +VAIPW G+       +D     + F +     + ++ V  E+ ++ +     
Sbjct: 514 YFSFKGVTVAIPWCGM------KTDRRGCRINFSHYSPEAKSKLEVASEVRDTER----- 562

Query: 185 XXXXXXXXXHGFFSESLPKGSA--TWPEENLPS-SLSMSPKMFKSQYKFLRTSYQSVHGS 241
                    + FF +   +GS   TWPEE LP+  L +       Q         S HG 
Sbjct: 563 -----FSLGNWFFIDGTCRGSTSMTWPEEKLPTWDLPLVEDECDHQN---LCHEDSSHGR 614

Query: 242 --PHAWNLAIVTAGWDGRIRWFQNYGLPVRL 270
                W L IV AG DG I+ F N+GLPVRL
Sbjct: 615 NISETWGLTIVAAGSDGTIKTFHNFGLPVRL 645


>IMGA|Medtr4g142040.1 WD-40 repeat family protein
           chr04_pseudomolecule_IMGAG_V3 35213072-35209413 E
           EGN_Mt090430 20090702
          Length = 645

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 144/271 (53%), Gaps = 26/271 (9%)

Query: 7   TNWCILHGSDGR-LQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDG 65
           T  C  + + G+  QL  Q  + GKKK++  +ITG Q+F ++  R+M+TS DSK+ ILD 
Sbjct: 394 TGTCRFYVASGKYFQLEGQIDIPGKKKASGNKITGIQFFQNNCQRIMITSEDSKICILDQ 453

Query: 66  VDVICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNY-AIKDGPVPRVKTNWACE 124
            +++ KY+G+  +GSQ+S  FTS G HIIS  EDS++Y+WN+   K G   + K++++CE
Sbjct: 454 TEIVQKYKGLPWSGSQMSGSFTSSGKHIISVGEDSHVYIWNFNDFKSGSSKKTKSDYSCE 513

Query: 125 HFFSNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXX 184
           +F     +VAIPW G+       +D     + F +     + ++ V  E+ ++ +     
Sbjct: 514 YFSFKGVTVAIPWCGM------KTDRRGCRINFSHYSPEAKSKLEVASEVRDTER----- 562

Query: 185 XXXXXXXXXHGFFSESLPKGSA--TWPEENLPS-SLSMSPKMFKSQYKFLRTSYQSVHGS 241
                    + FF +   +GS   TWPEE LP+  L +       Q         S HG 
Sbjct: 563 -----FSLGNWFFIDGTCRGSTSMTWPEEKLPTWDLPLVEDECDHQN---LCHEDSSHGR 614

Query: 242 --PHAWNLAIVTAGWDGRIRWFQNYGLPVRL 270
                W L IV AG DG I+ F N+GLPVRL
Sbjct: 615 NISETWGLTIVAAGSDGTIKTFHNFGLPVRL 645


>IMGA|Medtr3g143870.1 WD40-like chr03_pseudomolecule_IMGAG_V3
           37199076-37194576 E EGN_Mt090430 20090702
          Length = 628

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 132/264 (50%), Gaps = 25/264 (9%)

Query: 10  CILHGSDGR-LQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDV 68
           C  + + G+  QL A+  +  KK+S+S +ITG Q+   +  R+M+TS DSKVRIL+G ++
Sbjct: 387 CRFYVASGKQFQLEAKIRVNEKKRSSSNKITGIQFSQKNHRRVMITSQDSKVRILEGHEL 446

Query: 69  ICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRV-KTNWACEHFF 127
           +  Y+G+  +GSQ+S  FTS G HIIS  EDS +Y+WN+   +G   +  KT  +CE+F 
Sbjct: 447 VQTYKGLSMSGSQMSGSFTSSGKHIISVGEDSRVYIWNFNDSEGHFSKQRKTESSCEYFR 506

Query: 128 SNNASVAIPWPGLACGNSAS-SDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXX 186
           S   +VAIPW G+    S S SD    +           E+ S          C      
Sbjct: 507 SKGVTVAIPWSGMTAERSCSLSDFANYSSKTQRQCVRESERFSFGSWFSIDGSC------ 560

Query: 187 XXXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQSVHGSPHAWN 246
                           +GS TWPEE LPS  S   ++     +    +    +  P  W 
Sbjct: 561 ----------------RGSMTWPEEKLPSWDSPLSEVESEDEELCLKNLCHDNCVPETWG 604

Query: 247 LAIVTAGWDGRIRWFQNYGLPVRL 270
           L++V AG DG I+ F N+G P RL
Sbjct: 605 LSVVAAGLDGTIKTFHNFGFPARL 628


>IMGA|Medtr7g067570.1 WD40-like chr07_pseudomolecule_IMGAG_V3
           13684050-13679554 H EGN_Mt090430 20090702
          Length = 948

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 5/140 (3%)

Query: 10  CILHG-SDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDV 68
           C  +G  D +L   +   L+ KKKS  K++TGFQ+   +P+ ++VTSADS++RI+DG ++
Sbjct: 632 CRTYGIEDYKLTQTSTIELRNKKKSQLKKVTGFQFAPCNPAEVLVTSADSRIRIVDGTEI 691

Query: 69  ICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYA----IKDGPVPRVKTNWACE 124
           + K++G  NA SQ++A F+  G  IISASEDS +YVW +        G    V T  + E
Sbjct: 692 VHKFKGFRNANSQMAASFSPNGRFIISASEDSQVYVWKHEEHRNSNTGKSRTVLTTQSHE 751

Query: 125 HFFSNNASVAIPWPGLACGN 144
           HF   + SVAIPWP +  G+
Sbjct: 752 HFPCKDVSVAIPWPFMIKGD 771