Jatropha Genome Database

JcCB0072841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0072841.10 + phase: 0 
         (119 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g074450.1 Hypothetical plant protein chr02_pseudomole...    84   1e-17

>IMGA|Medtr2g074450.1 Hypothetical plant protein
           chr02_pseudomolecule_IMGAG_V3 17095058-17092275 E
           EGN_Mt090430 20090702
          Length = 436

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 31  VSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQSD--VHLSSIPPK 88
           V  S M +W+LRA TT +LW C+VQL A G+MWGPR+LKGWPSCF+     + L S  P+
Sbjct: 46  VRSSRMNMWMLRATTTVILWICIVQLTAFGDMWGPRVLKGWPSCFTHESAIIELPSTKPR 105

Query: 89  VVLPPKSKFK 98
            VLPPK  +K
Sbjct: 106 -VLPPKRVYK 114