Jatropha Genome Database

JcCB0072041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0072041.10 - phase: 2 /pseudo/partial
         (133 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g023930.1 Zinc finger, CCHC-type chr05_pseudomolecule...    84   2e-17
IMGA|Medtr8g024170.1 hypothetical protein chr08_pseudomolecule_I...    81   1e-16
IMGA|Medtr4g159470.1 hypothetical protein chr04_pseudomolecule_I...    77   2e-15
IMGA|Medtr1g126820.1 hypothetical protein chr01_pseudomolecule_I...    75   1e-14
IMGA|Medtr1g117580.1 hypothetical protein chr01_pseudomolecule_I...    75   1e-14
IMGA|Medtr1g093100.1 Zinc finger, CCHC-type chr01_pseudomolecule...    72   1e-13
IMGA|Medtr6g043820.1 hypothetical protein chr06_pseudomolecule_I...    68   2e-12
IMGA|Medtr8g043470.1 hypothetical protein chr08_pseudomolecule_I...    67   2e-12
IMGA|Medtr6g012990.1 hypothetical protein chr06_pseudomolecule_I...    58   1e-09
IMGA|Medtr5g085770.1 Zinc finger, CCHC-type chr05_pseudomolecule...    57   3e-09
IMGA|Medtr5g088920.1 hypothetical protein chr05_pseudomolecule_I...    53   4e-08
IMGA|Medtr8g133750.1 Zinc finger, CCHC-type, related chr08_pseud...    51   1e-07
IMGA|Medtr1g087330.1 hypothetical protein chr01_pseudomolecule_I...    48   2e-06
IMGA|Medtr2g114220.1 hypothetical protein chr02_pseudomolecule_I...    45   7e-06

>IMGA|Medtr5g023930.1 Zinc finger, CCHC-type
           chr05_pseudomolecule_IMGAG_V3 9477733-9471443 E
           EGN_Mt090430 20090702
          Length = 652

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CLVGRLL  + V+F + ++ +A IW+P + V I ++ +N ++FQFFH  D+ERV++  PW
Sbjct: 200 CLVGRLLMSKPVHFNSFRDRMAEIWKPERKVEISRIDNNRFMFQFFHHKDMERVIRTGPW 259

Query: 96  TINHRSXXXXXXQKDDSPRKVSLTTMEIWVQVFDLNF 132
             ++           D P    L T+E+WVQ  +L F
Sbjct: 260 LFDNFPLVLQKVSFGDDPTTSPLDTIEMWVQAHNLPF 296


>IMGA|Medtr8g024170.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 4512491-4512114 H
           EGN_Mt090430 20090702
          Length = 125

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CLVGR L +R      M   ++ +WRPVK V + +    L+LFQFFH+LD+E VLKG PW
Sbjct: 34  CLVGRFLVNRPARLKEMMIRMSEVWRPVKEVVVKEAQPGLFLFQFFHKLDLEEVLKGGPW 93

Query: 96  TINHRSXXXXXXQKDDSPRKVSLTTMEIWVQV 127
           T ++ S      +     + + L  M +WV+V
Sbjct: 94  TYDNHSLVLEKLRIGVPLKDIQLNYMNLWVRV 125


>IMGA|Medtr4g159470.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 40244777-40245604 H
           EGN_Mt090430 20090702
          Length = 213

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CLVGR L +R +    MK  +  +WRPVKGV + +    L+LFQFFH+LD+E +L G PW
Sbjct: 34  CLVGRFLVNRPIRLKEMKIRMYEVWRPVKGVAVKEAQPRLFLFQFFHKLDMEEILNGGPW 93

Query: 96  TINHRS 101
           T +  S
Sbjct: 94  TYDSHS 99


>IMGA|Medtr1g126820.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 28356085-28354664 H
           EGN_Mt090430 20090702
          Length = 473

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 56/97 (57%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CLVGR L+++ + F A +N LA +W+P K +      +N +LFQFF + D+ERVL   PW
Sbjct: 29  CLVGRWLSNKPIRFHATRNRLAHLWQPDKKMDATLTENNRFLFQFFDQGDMERVLHTGPW 88

Query: 96  TINHRSXXXXXXQKDDSPRKVSLTTMEIWVQVFDLNF 132
             ++        +  ++P  + +  M+IW+Q  +L F
Sbjct: 89  HFDNYPMLLRKLEFGENPLTMPIDMMDIWIQAHNLPF 125


>IMGA|Medtr1g117580.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 25273871-25275952 H
           EGN_Mt090430 20090702
          Length = 663

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 43/63 (68%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CLVG +LTD  V F  M+  L SIWRP +GVTI +   N + FQF+HE DVERVL+  PW
Sbjct: 184 CLVGTVLTDTPVRFQFMEERLPSIWRPGQGVTITQAGENRFHFQFYHEWDVERVLQNGPW 243

Query: 96  TIN 98
           T +
Sbjct: 244 TFD 246


>IMGA|Medtr1g093100.1 Zinc finger, CCHC-type
           chr01_pseudomolecule_IMGAG_V3 18824066-18830760 E
           EGN_Mt090430 20090702
          Length = 779

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CLVGRLLT + V F   K  ++++W+P   V I  +  N ++FQFF+  D+ERV +  PW
Sbjct: 322 CLVGRLLTTKPVRFQNFKTRMSTLWQPKHQVDITLMEPNRFMFQFFNYADMERVTQQGPW 381

Query: 96  TINHRSXXXXXXQKDDSPRKVSLTTMEIWVQVFDLNF 132
             +              P  + + ++E+W+QV +L F
Sbjct: 382 LFDSYPLIWSKVSDGKDPFTMPIDSIELWMQVHNLPF 418


>IMGA|Medtr6g043820.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 9231244-9232746 H
           EGN_Mt090430 20090702
          Length = 500

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 53/97 (54%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CL+G+++ ++ V+ + ++  L  IWRP   + + ++  N ++ Q FH  +++R+L+G P 
Sbjct: 28  CLIGKVVVNKPVHISTIEGRLGPIWRPTHQMDLIQMDDNKFMVQLFHRGELDRILEGSPS 87

Query: 96  TINHRSXXXXXXQKDDSPRKVSLTTMEIWVQVFDLNF 132
            ++            + P  + +T  EIWVQ+  L F
Sbjct: 88  LVDSNMVILKKVNVGEDPASIPMTKTEIWVQIHQLPF 124


>IMGA|Medtr8g043470.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 9395963-9394362 E
           EGN_Mt090430 20090702
          Length = 533

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 54/97 (55%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CL+GR++ ++ V+ + ++  L ++W PV  + +  +  N ++ Q F + D+  VL+G PW
Sbjct: 26  CLIGRVVVNKPVHLSTIEGRLGNMWCPVMKMKLLPMDDNKFMVQMFSKADLNVVLEGSPW 85

Query: 96  TINHRSXXXXXXQKDDSPRKVSLTTMEIWVQVFDLNF 132
            +++R          + P  + + + EIWVQV  L F
Sbjct: 86  LLDNRMIIVKKVAMGEDPLTLPMNSTEIWVQVHQLPF 122


>IMGA|Medtr6g012990.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 2607860-2609163 H
           EGN_Mt090430 20090702
          Length = 228

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERV 89
           CLVGR L +  V    MK  +  +WRPVKGV + +     +LFQFFH+LDVE +
Sbjct: 96  CLVGRFLVNCPVRLKEMKIRMFEVWRPVKGVAVKEAQPGQFLFQFFHKLDVEEL 149


>IMGA|Medtr5g085770.1 Zinc finger, CCHC-type
           chr05_pseudomolecule_IMGAG_V3 32808134-32806618 E
           EGN_Mt090430 20090702
          Length = 491

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 36  CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPW 95
           CLVGRLLT + V F   K  ++++W+P                QFF+  D+ERV +  PW
Sbjct: 143 CLVGRLLTTKPVRFQNFKTCMSTLWQPKH--------------QFFNYADMERVTQQGPW 188

Query: 96  TINHRSXXXXXXQKDDSPRKVSLTTMEIWVQVFDLNF 132
             +              P  + + ++E+W+QV +L F
Sbjct: 189 LFDSYPLIWSKVSDGKDPFTMPIDSIELWMQVHNLPF 225


>IMGA|Medtr5g088920.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 34521577-34513780 H
           EGN_Mt090430 20090702
          Length = 283

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 55/105 (52%)

Query: 26  VEDKGKGYQRCLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELD 85
           V++  K  Q  L+G++L ++ ++   + NTL+SIW    G+ I +L   +   Q  +E D
Sbjct: 97  VKESIKHCQHSLIGKILAEKPISTQILYNTLSSIWCKHVGLKINELEGKIIQIQMENEDD 156

Query: 86  VERVLKGKPWTINHRSXXXXXXQKDDSPRKVSLTTMEIWVQVFDL 130
           ++R+LKG PW I +         ++   + +    + +W+Q + L
Sbjct: 157 IQRILKGSPWIIRNCWLVLHNWDRNLDVKSLDFDHVPLWIQFWGL 201


>IMGA|Medtr8g133750.1 Zinc finger, CCHC-type, related
           chr08_pseudomolecule_IMGAG_V3 31989698-31990763 H
           EGN_Mt090430 20090702
          Length = 320

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 52  MKNTLASIWRPV-KGVTIXKLHSNLYLFQFFHELDVERVLKGKPWTINHRS 101
           M   ++ +WR V + V + +    L+LFQFFH+LD+E VLKG PWT ++ S
Sbjct: 1   MNIRMSEVWRSVGERVAVKEAQPGLFLFQFFHKLDMEEVLKGGPWTYDNHS 51


>IMGA|Medtr1g087330.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 17573397-17575725 E
           EGN_Mt090430 20090702
          Length = 361

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/105 (20%), Positives = 56/105 (53%)

Query: 26  VEDKGKGYQRCLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELD 85
           ++++ +  Q  ++G+++++++++  +++N L++IW   KG  +  +   L+ F    + D
Sbjct: 75  IQERLEECQNSILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKLFHFFMDEQED 134

Query: 86  VERVLKGKPWTINHRSXXXXXXQKDDSPRKVSLTTMEIWVQVFDL 130
            +R+++G PW   +        ++D   R +      IWVQ+  L
Sbjct: 135 TKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGL 179


>IMGA|Medtr2g114220.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 26974286-26974618 H
           EGN_Mt090430 20090702
          Length = 110

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 41  LLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPWTINHR 100
           +L+++ ++   M NTL  IW    G  I ++   +  F+   E DV+R+LKG PW I + 
Sbjct: 18  ILSNKLISNQVMHNTLTGIWSNPVGFKIAEIEGRILQFKMDKEEDVQRILKGSPWIIRNC 77

Query: 101 SXXXXXXQKDDSPRKVSLTTMEIWVQVFDL 130
                   ++    ++  ++  +W+Q + L
Sbjct: 78  WLILHGWDRNMDVSRLDFSSAPLWIQFWGL 107