Jatropha Genome Database

JcCB0071481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071481.10 + phase: 1 /partial
         (144 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140980.1 Light-inducible protein CPRF-2, related chr...    87   3e-18
IMGA|Medtr7g140980.2 Light-inducible protein CPRF-2, related chr...    49   1e-06

>IMGA|Medtr7g140980.1 Light-inducible protein CPRF-2, related
           chr07_pseudomolecule_IMGAG_V3 34043703-34046960 E
           EGN_Mt090430 20090702
          Length = 389

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 76/127 (59%), Gaps = 13/127 (10%)

Query: 22  VDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASNTSQSGSHVPKG--- 78
           +DS++YQA LK++L LACAAVA SR   +KSQD     D+GSQ S   + G         
Sbjct: 81  IDSEDYQALLKTKLDLACAAVAKSRGSLVKSQD----PDNGSQPSYPYELGPLATLKECG 136

Query: 79  -AGNDLSRPQDTDANGLVGIHSSTQKKSGVPMKSTTSGSSREQSEDDENEGETEMNMKDP 137
            +GND S+ Q+ D    VG+     KK  V +KSTTSGS    S+D+E +GE  MN  +P
Sbjct: 137 PSGNDPSKLQNKDIKVAVGV-PCMPKKPAVTIKSTTSGS----SDDEEGDGEINMNGDNP 191

Query: 138 ADAKRVR 144
            DAKRVR
Sbjct: 192 TDAKRVR 198


>IMGA|Medtr7g140980.2 Light-inducible protein CPRF-2, related
           chr07_pseudomolecule_IMGAG_V3 34043703-34044687 E
           EGN_Mt090430 20090702
          Length = 152

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 22  VDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASNTSQSG 72
           +DS++YQA LK++L LACAAVA SR   +KSQD     D+GSQ S   + G
Sbjct: 81  IDSEDYQALLKTKLDLACAAVAKSRGSLVKSQD----PDNGSQPSYPYELG 127