Jatropha Genome Database

JcCB0071361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071361.10 + phase: 1 /partial
         (100 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g104300.1 Phosphoribulokinase/uridine kinase chr05_ps...   112   4e-26
IMGA|Medtr3g080300.1 Phosphoribosyltransferase; Phosphoribulokin...   108   6e-25
IMGA|Medtr3g080300.2 Phosphoribosyltransferase; Phosphoribulokin...   108   6e-25
IMGA|Medtr6g022880.1 Phosphoribosyltransferase; Phosphoribulokin...   103   3e-23
IMGA|Medtr8g109340.1 Phosphoribosyltransferase; Excinuclease ABC...    99   4e-22

>IMGA|Medtr5g104300.1 Phosphoribulokinase/uridine kinase
           chr05_pseudomolecule_IMGAG_V3 41812941-41819472 E
           EGN_Mt090430 20090702
          Length = 479

 Score =  112 bits (280), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 68/100 (68%), Gaps = 24/100 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A++AISL++ KGVPESNIIFLNLI+                        APQG+H VC
Sbjct: 395 NSAVQAISLIIRKGVPESNIIFLNLIS------------------------APQGLHVVC 430

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDEE 100
            ++P++KIVTSEID  L+ DFRV+PGMG FGDRYFGTD++
Sbjct: 431 KRFPRIKIVTSEIDNGLNEDFRVVPGMGEFGDRYFGTDDD 470


>IMGA|Medtr3g080300.1 Phosphoribosyltransferase;
           Phosphoribulokinase/uridine kinase
           chr03_pseudomolecule_IMGAG_V3 18843227-18850010 E
           EGN_Mt090430 20090702
          Length = 476

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 67/100 (67%), Gaps = 24/100 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A++AISLL+ KGVPESNIIFLNLI+                        AP+G+H VC
Sbjct: 393 NSAVQAISLLIQKGVPESNIIFLNLIS------------------------APKGVHVVC 428

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDEE 100
             +P++KIVTSEI+  L+ DFRVIPGMG FGDRYFGTD++
Sbjct: 429 KCFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDD 468


>IMGA|Medtr3g080300.2 Phosphoribosyltransferase;
           Phosphoribulokinase/uridine kinase
           chr03_pseudomolecule_IMGAG_V3 18843227-18850010 E
           EGN_Mt090430 20090702
          Length = 466

 Score =  108 bits (270), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 67/100 (67%), Gaps = 24/100 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A++AISLL+ KGVPESNIIFLNLI+                        AP+G+H VC
Sbjct: 383 NSAVQAISLLIQKGVPESNIIFLNLIS------------------------APKGVHVVC 418

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDEE 100
             +P++KIVTSEI+  L+ DFRVIPGMG FGDRYFGTD++
Sbjct: 419 KCFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDD 458


>IMGA|Medtr6g022880.1 Phosphoribosyltransferase;
           Phosphoribulokinase/uridine kinase
           chr06_pseudomolecule_IMGAG_V3 5229442-5233044 H
           EGN_Mt090430 20090702
          Length = 324

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 64/99 (64%), Gaps = 24/99 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A KAISLLL KGV ESNIIFLNLIA                        APQGI+A+C
Sbjct: 250 NSATKAISLLLKKGVQESNIIFLNLIA------------------------APQGINAIC 285

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDE 99
            K+P +K+VTSEIDATL+ + RVIPGMG F DRYF TD+
Sbjct: 286 EKFPMLKLVTSEIDATLNENSRVIPGMGEFSDRYFATDD 324


>IMGA|Medtr8g109340.1 Phosphoribosyltransferase; Excinuclease ABC, C
           subunit, C-terminal; Phosphoribulokinase/uridine kinase
           chr08_pseudomolecule_IMGAG_V3 24500586-24495254 E
           EGN_Mt090430 20090702
          Length = 458

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 24/99 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A +AI LL+ KGVPES IIFLNL++                        AP+GIH VC
Sbjct: 383 NSASQAIELLIKKGVPESRIIFLNLVS------------------------APEGIHCVC 418

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDE 99
             +P +K+VTSEID  L++ FRV+PG+G FGDRYFGTD+
Sbjct: 419 KHFPHLKVVTSEIDEGLNDQFRVVPGLGEFGDRYFGTDD 457