Jatropha Genome Database

JcCB0070851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070851.10 - phase: 0 /partial
         (128 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099360.1 Zinc finger, RING-type chr01_pseudomolecule...   154   1e-38

>IMGA|Medtr1g099360.1 Zinc finger, RING-type
           chr01_pseudomolecule_IMGAG_V3 20287188-20289387 E
           EGN_Mt090430 20090702
          Length = 269

 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 93/126 (73%), Gaps = 7/126 (5%)

Query: 9   ENEPSS--SQDSNPCPICLGPFIQESYLDSCFHKFCYNCILRWTKVVAGKHSRAP---SS 63
           ENE S+  S DS  CPICLGPFIQ SYLD C H+FC+NCILRW KVV+GKH   P   SS
Sbjct: 2   ENESSAPNSHDS-ICPICLGPFIQPSYLDHCLHQFCFNCILRWIKVVSGKHYHTPPPSSS 60

Query: 64  VKCPLCKTENLSIIYGYDGSSFQRHCINETHEHSSF-FSKAHKYRLRCYYTEPGTLSNIV 122
           VKCPLCKT+N SII+G DG+ FQRH IN   +   F  S+AH+YRL+CYYT+ G + +I 
Sbjct: 61  VKCPLCKTDNFSIIHGVDGTCFQRHYINTNLQDDCFVLSRAHRYRLQCYYTQQGCVEDIF 120

Query: 123 NVSRYW 128
           NV +YW
Sbjct: 121 NVLQYW 126