Jatropha Genome Database

JcCB0069321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0069321.10 + phase: 2 /pseudo/partial
         (496 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g023340.1 Aminoacyl-tRNA synthetase, class 1a, antico...   578   e-165
IMGA|Medtr4g106980.1 t-RNA-binding region; Aminoacyl-tRNA synthe...   143   2e-34
IMGA|Medtr8g136990.1 Aminoacyl-tRNA synthetase, class I; chr08_p...    71   1e-12
IMGA|Medtr8g137000.1 Aminoacyl-tRNA synthetase, class 1a, antico...    66   4e-11

>IMGA|Medtr1g023340.1 Aminoacyl-tRNA synthetase, class 1a,
           anticodon-binding; ; chr01_pseudomolecule_IMGAG_V3
           5142088-5136592 E EGN_Mt090430 20090702
          Length = 498

 Score =  578 bits (1491), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/403 (68%), Positives = 311/403 (77%), Gaps = 49/403 (12%)

Query: 85  LGKKVIFVTGTDEHGEKIXXXXXXXXXSPSEHCDVISQAYKTLWKDLEIAYDKFIRTTDP 144
           LGKKVIF+TGTDEHGEKI         +P++HC++ISQAYKTLW DL+I+YDKFIRTTD 
Sbjct: 64  LGKKVIFITGTDEHGEKIATAATVQGSTPTDHCNLISQAYKTLWNDLDISYDKFIRTTDS 123

Query: 145 KHEAIVKEFYSRVLANGDIYRADYEGLYCVNCEEYKDEKDLLDNKCCPVHLKPCIQRKED 204
           KH A+VKEFYSRVLANG+IYRADYEG+Y V+CEEYKDEK+LL+N CCP+HLKPC+ RKED
Sbjct: 124 KHVAVVKEFYSRVLANGNIYRADYEGIYSVSCEEYKDEKELLENNCCPIHLKPCVSRKED 183

Query: 205 NYFFALSKYQKLLEETLTECPNFVQPSFRLNEVQSWIRSGLKDFSISRASVDWGIPVPND 264
           NYFFALSKYQK LEE L + PNFVQP FRL+                             
Sbjct: 184 NYFFALSKYQKSLEEILNKNPNFVQPCFRLH----------------------------- 214

Query: 265 NKQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGWPASLHLIGKDILRFHAVYWPAMLM 324
                               E  +QP+L + VSS WPA+LHLIGKDILRFHAVYWPAMLM
Sbjct: 215 --------------------EVQEQPDLLNTVSSSWPATLHLIGKDILRFHAVYWPAMLM 254

Query: 325 SAGLGLPKMVFGHGFLTKDGLKMGKSLGNTLEPNELIEKFGPDAVRYFFLREVEFGSDGD 384
           SAGL LPK+V+GHGFLTKDG+KMGKSLGNTLEPN+L+ KFG DAVRYFFLREVEFG+DGD
Sbjct: 255 SAGLSLPKIVYGHGFLTKDGMKMGKSLGNTLEPNDLVSKFGTDAVRYFFLREVEFGNDGD 314

Query: 385 YSEERFVNIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDAAIAAEGNAFKDNVEKLVEK 444
           YSEERF+NIVNAHL NTIGNLLNRTLGLLKKNCQSTL VD   AAEGN FKDNV +LV+K
Sbjct: 315 YSEERFINIVNAHLPNTIGNLLNRTLGLLKKNCQSTLAVDFTTAAEGNGFKDNVARLVDK 374

Query: 445 ARIHYENLSLSLACEAVLEIGNAGNGYMDERTPWSLFXERGVG 487
           A +HYENLSL+ ACEAVLEIGNAGN YMDER PWSLF + G  
Sbjct: 375 AHMHYENLSLTSACEAVLEIGNAGNSYMDERAPWSLFKQGGTA 417


>IMGA|Medtr4g106980.1 t-RNA-binding region; Aminoacyl-tRNA
           synthetase, class 1a, anticodon-binding; ; ;
           chr04_pseudomolecule_IMGAG_V3 23251462-23239267 E
           EGN_Mt090430 20090702
          Length = 806

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 205/489 (41%), Gaps = 74/489 (15%)

Query: 52  VLTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLGKKVIFVTGTDEHGEKIXXXXXXXX 110
           ++T+ L YVN  PH+G+     ++AD  AR+ RL G   I++ GTDE+G           
Sbjct: 19  LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEEN 78

Query: 111 XSPSEHCDVISQAYKTLWKDLEIAYDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYEG 170
            SP E CD     +K ++    I++D+F RT+ P+   + +  + +V  N  +     + 
Sbjct: 79  CSPKEICDKYHAIHKEVYDWFNISFDEFGRTSSPEQTEVCQAIFKKVHENNWLSEDTLQQ 138

Query: 171 LYCVNCEEYKDEKDLLDNKCCPV----------------------------HLKPCIQRK 202
           LYC  C+ +    D L    CP+                              K C    
Sbjct: 139 LYCDTCKRFL--ADRLVEGTCPIPGCEYDSARGDQCENCGNLLNPTELKIPKCKVCRNSP 196

Query: 203 E----DNYFFALSKYQKLLEETLTECPNFVQPSFRLNEVQ---SWIRSGLKDFSISRASV 255
                D+ F  L   +  L++ + E    V  S+  N +Q   SW + GLK   I+R  +
Sbjct: 197 RICDTDHLFLELPLLEDKLQKYINEMS--VVGSWSQNAIQTTNSWFKMGLKKRCITR-DL 253

Query: 256 DWGIPVPND--NKQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGW------PASLHL- 306
            WG+PVP++  + +  YVWFDA +GYIS          + +  +  W      P ++ L 
Sbjct: 254 KWGVPVPHEKYSDKVFYVWFDAPIGYIS----------ITAGYTRDWEKWWKNPENVELF 303

Query: 307 --IGKDILRFHAVYWPAMLMSAGLG--LPKMVFGHGFLTKDGLKMGKSLGNTLEPNELIE 362
             +GKD + FH V +P+ L+  G    L K +    +L  +  K  KS G  +  N+  +
Sbjct: 304 QFMGKDNVPFHTVMFPSTLLGTGQNWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKD 363

Query: 363 KFGPDAV-RYFFLREVEFGSDGDYSEERFVNIVNAHLANTIGNLLNRTLGLLKKNCQS-- 419
              P  V RY+ L      SD  ++       +N  L N +GN +NR L  + K      
Sbjct: 364 TNIPVEVWRYYLLTNRPEVSDTLFTWSDLQAKLNTELLNNLGNFVNRVLSFIAKPAGQGY 423

Query: 420 -TLVVDAAIAAEGNA------FKDNVEKLVEKARIHYENLSLSLACEAVLEIGNAGNGYM 472
            +++        G++      F + V   +E+     E + L    +  + I   GN Y+
Sbjct: 424 DSIIPTVPDDVSGDSHDPTKKFANKVAAYMEQYIESMEKVKLKQGLKIAMSISGEGNAYL 483

Query: 473 DERTPWSLF 481
            E   W L+
Sbjct: 484 QETEFWRLY 492


>IMGA|Medtr8g136990.1 Aminoacyl-tRNA synthetase, class I;
           chr08_pseudomolecule_IMGAG_V3 32751160-32751856 E
           EGN_Mt090430 20090702
          Length = 145

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 1/122 (0%)

Query: 52  VLTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLGKKVIFVTGTDEHGEKIXXXXXXXX 110
           ++T+ L YVN  PH+G+     ++AD  AR+ RL G  V+++ GTDE+G  I        
Sbjct: 19  LITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNVLYICGTDEYGTPIVTRALEQN 78

Query: 111 XSPSEHCDVISQAYKTLWKDLEIAYDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYEG 170
            SP +  D     +K ++   +I++DKF RT+ P+   I +  + ++  N  I     E 
Sbjct: 79  CSPKQIADKYHAIHKEVYDWFDISFDKFGRTSSPEQTEICQSIFQKIFDNKWISERTMEQ 138

Query: 171 LY 172
           ++
Sbjct: 139 VF 140


>IMGA|Medtr8g137000.1 Aminoacyl-tRNA synthetase, class 1a,
           anticodon-binding; chr08_pseudomolecule_IMGAG_V3
           32751858-32756577 E EGN_Mt090430 20090702
          Length = 533

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 122/263 (46%), Gaps = 31/263 (11%)

Query: 170 GLYCVNCEEYKDEKDLLDNKCCPVHLKPCIQRKEDNYFFALSKYQKLLEETLTECPNFVQ 229
           G  C  C +  +  +L + +C      P + R  D+ F  L  ++  LE+ + E    V 
Sbjct: 37  GDQCDKCGKLLNPTELKNPRCKVCEKSPRL-RDTDHLFLELPLFKDKLEKYVNEMS--VV 93

Query: 230 PSFRLNEVQSW---IRSGLKDFSISRASVDWGIPVPND--NKQTIYVWFDALLGYISALS 284
            S+  N +Q+    +R GL+   I+R  + WG+PVP++  + +  YVWFDA +GYIS   
Sbjct: 94  GSWSQNAIQTTNARLRDGLERRCITR-DLKWGVPVPHEKYSNKVFYVWFDAPIGYIS--- 149

Query: 285 EDNKQPNLQSAVSSGW------PASLHL---IGKDILRFHAVYWPAMLMSAG--LGLPKM 333
                  + +  +  W      P ++ L   +GKD + FH V +P+ L+  G    L K 
Sbjct: 150 -------ITACYTHDWEKWWKNPENVELYQFMGKDNVFFHTVIFPSTLLGTGENWTLMKT 202

Query: 334 VFGHGFLTKDGLKMGKSLGNTLEPNELIEKFGPDAV-RYFFLREVEFGSDGDYSEERFVN 392
           +    +L  +  K  KS G  +  N++ +   P  V RY+ L      SD D++      
Sbjct: 203 ISVTEYLKYESGKFSKSDGIGVFGNDVKDTNIPVEVWRYYLLINRPEVSDTDFTWPDLQA 262

Query: 393 IVNAHLANTIGNLLNRTLGLLKK 415
            +N  L N +GN +NR L  + K
Sbjct: 263 KLNNELLNNLGNFVNRVLSFIAK 285