Jatropha Genome Database

JcCB0068571.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0068571.20 - phase: 0 
         (79 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g096990.1 Light regulated Lir1 chr07_pseudomolecule_I...   114   8e-27

>IMGA|Medtr7g096990.1 Light regulated Lir1
           chr07_pseudomolecule_IMGAG_V3 21847726-21845777 E
           EGN_Mt090430 20090702
          Length = 144

 Score =  114 bits (286), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 64/79 (81%), Gaps = 2/79 (2%)

Query: 3   SVFPAEACETIGGEACLADIYPEVKLEREARNEA--GIASEPIEREYLDYNDAKTVFVGE 60
           SVFPAEACET+GG+ACLAD+ PEVKL+ EARN+     AS  IEREYLDYN+ KTVF  E
Sbjct: 66  SVFPAEACETVGGDACLADMNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAE 125

Query: 61  ACDDLGGEFCGFEYQKGVY 79
           ACDDLGG FC  +YQKGVY
Sbjct: 126 ACDDLGGAFCEPDYQKGVY 144