Jatropha Genome Database

JcCB0065971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065971.10 + phase: 0 
         (162 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g031060.1 Superoxide dismutase, copper/zinc binding c...   244   2e-65
IMGA|Medtr7g140060.1 Superoxide dismutase, copper/zinc binding c...   206   4e-54
IMGA|Medtr4g076170.1 Superoxide dismutase, copper/zinc binding c...   181   1e-46
IMGA|Medtr6g031060.2 Superoxide dismutase, copper/zinc binding c...   149   4e-37
IMGA|Medtr8g106410.1 Superoxide dismutase, copper/zinc binding; ...    59   1e-09

>IMGA|Medtr6g031060.1 Superoxide dismutase, copper/zinc binding
           chr06_pseudomolecule_IMGAG_V3 7035859-7031913 E
           EGN_Mt090430 20090702
          Length = 161

 Score =  244 bits (622), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/147 (84%), Positives = 134/147 (91%), Gaps = 2/147 (1%)

Query: 17  GEPNVRGSIHFVQRPNGP-THVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKK 75
           G+ NVRGS+HF+Q PNG  THVTG+ITGLSPGLHGFHIHA GDTTNGCNSTGPHFNP KK
Sbjct: 16  GDNNVRGSLHFLQHPNGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKK 75

Query: 76  DHGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKA 135
           DHGAPTD ERHAGDLGNIV GPDG+AE+S++D +IPLSG HSILGRAVVVHADPDDLG+ 
Sbjct: 76  DHGAPTDDERHAGDLGNIVAGPDGVAEISIRDGKIPLSGVHSILGRAVVVHADPDDLGR- 134

Query: 136 GGHELSKTTGNAGARVGCGIIGLHSSV 162
           GGHELSKTTGNAGARV CGIIGL SSV
Sbjct: 135 GGHELSKTTGNAGARVACGIIGLQSSV 161


>IMGA|Medtr7g140060.1 Superoxide dismutase, copper/zinc binding
           chr07_pseudomolecule_IMGAG_V3 33647393-33650274 E
           EGN_Mt090430 20090702
          Length = 152

 Score =  206 bits (525), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 115/140 (82%), Gaps = 1/140 (0%)

Query: 20  NVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHGA 79
           +V G+I F Q  NGPT VTG ++GL PGLHGFHIHA GDTTNGC STGPHFNP  K+HGA
Sbjct: 13  DVSGTISFTQEGNGPTTVTGNLSGLKPGLHGFHIHALGDTTNGCLSTGPHFNPNGKEHGA 72

Query: 80  PTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAGGHE 139
           P D+ RHAGDLGN+ VG DG A  ++ D QIPL+GP+SI+GRAVVVHADPDDLGK GGHE
Sbjct: 73  PEDETRHAGDLGNVTVGDDGTASFTITDNQIPLTGPNSIIGRAVVVHADPDDLGK-GGHE 131

Query: 140 LSKTTGNAGARVGCGIIGLH 159
           LSKTTGNAG RV CGIIGL 
Sbjct: 132 LSKTTGNAGGRVACGIIGLQ 151


>IMGA|Medtr4g076170.1 Superoxide dismutase, copper/zinc binding
           chr04_pseudomolecule_IMGAG_V3 15060986-15057237 F
           EGN_Mt090430 20090702
          Length = 202

 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 108/142 (76%), Gaps = 1/142 (0%)

Query: 17  GEPNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKD 76
           G   V G +   Q   GPT V  RITGL+PGLHGFH+H +GDTTNGC STGPHFNP +  
Sbjct: 59  GNSTVEGVVTLTQENEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLT 118

Query: 77  HGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAG 136
           HGAP D+ RHAGDLGNI+   +G+AE ++ D QIPL+GP+S++GRA+VVH   DDLGK G
Sbjct: 119 HGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGK-G 177

Query: 137 GHELSKTTGNAGARVGCGIIGL 158
           GHELS +TGNAG R+ CG++GL
Sbjct: 178 GHELSLSTGNAGGRLACGVVGL 199


>IMGA|Medtr6g031060.2 Superoxide dismutase, copper/zinc binding
           chr06_pseudomolecule_IMGAG_V3 7035859-7031913 E
           EGN_Mt090430 20090702
          Length = 115

 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 80/95 (84%), Gaps = 1/95 (1%)

Query: 17  GEPNVRGSIHFVQRPNG-PTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKK 75
           G+ NVRGS+HF+Q PNG  THVTG+ITGLSPGLHGFHIHA GDTTNGCNSTGPHFNP KK
Sbjct: 16  GDNNVRGSLHFLQHPNGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKK 75

Query: 76  DHGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQI 110
           DHGAPTD ERHAGDLGNIV GPDGI    ++   I
Sbjct: 76  DHGAPTDDERHAGDLGNIVAGPDGITFFLLRLFYI 110


>IMGA|Medtr8g106410.1 Superoxide dismutase, copper/zinc binding;
           Heavy metal transport/detoxification protein
           chr08_pseudomolecule_IMGAG_V3 23853654-23858615 E
           EGN_Mt090430 20090702
          Length = 312

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 19  PNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHG 78
           P + G +   Q       +    +GLSPG H + I+ FGD T G  STG  FNP  +++ 
Sbjct: 164 PEIFGVVRLAQVNMELARIEANFSGLSPGKHSWSINEFGDLTRGAASTGKVFNPLNEEN- 222

Query: 79  APTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPD 130
                +   GDLG + V   G A  +    ++ +S    ++GRAVV++A  D
Sbjct: 223 ----TKEPLGDLGTLDVNEKGEAFFTGVKEKLRVS---DLIGRAVVLYATED 267