Jatropha Genome Database

JcCB0065721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065721.30 - phase: 1 /partial
         (109 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g008360.1 Pentatricopeptide repeat chr05_pseudomolecu...    53   4e-08
IMGA|Medtr2g042470.1 Pentatricopeptide repeat chr02_pseudomolecu...    52   8e-08
IMGA|Medtr2g041460.1 Pentatricopeptide repeat chr02_pseudomolecu...    49   5e-07
IMGA|Medtr5g102690.1 Pentatricopeptide repeat chr05_pseudomolecu...    49   7e-07
IMGA|Medtr3g149040.1 Pentatricopeptide repeat chr03_pseudomolecu...    49   8e-07
IMGA|Medtr2g130030.1 Pentatricopeptide repeat chr02_pseudomolecu...    49   9e-07
IMGA|Medtr1g106200.1 Pentatricopeptide repeat chr01_pseudomolecu...    48   1e-06
IMGA|Medtr1g039940.1 Pentatricopeptide repeat chr01_pseudomolecu...    48   1e-06
IMGA|Medtr5g007390.1 Pentatricopeptide repeat chr05_pseudomolecu...    48   1e-06
IMGA|Medtr4g157210.1 Pentatricopeptide repeat chr04_pseudomolecu...    47   2e-06
IMGA|Medtr5g029600.1 Pentatricopeptide repeat chr05_pseudomolecu...    47   2e-06
IMGA|Medtr3g138450.1 Pentatricopeptide repeat chr03_pseudomolecu...    47   2e-06
IMGA|Medtr4g042010.1 Pentatricopeptide repeat chr04_pseudomolecu...    47   2e-06
IMGA|Medtr8g042960.1 Pentatricopeptide repeat chr08_pseudomolecu...    47   3e-06
IMGA|Medtr7g107370.1 Pentatricopeptide repeat chr07_pseudomolecu...    47   3e-06
IMGA|Medtr7g010810.1 Pentatricopeptide repeat chr07_pseudomolecu...    46   5e-06
IMGA|Medtr8g148450.1 Smr protein/MutS2 C-terminal chr08_pseudomo...    46   5e-06
IMGA|Medtr8g112280.1 Pentatricopeptide repeat chr08_pseudomolecu...    46   5e-06
IMGA|AC234703_7.1 pentatricopeptide, related AC234703.1 43858-47...    46   6e-06
IMGA|Medtr2g123230.1 Pentatricopeptide repeat chr02_pseudomolecu...    46   6e-06

>IMGA|Medtr5g008360.1 Pentatricopeptide repeat
           chr05_pseudomolecule_IMGAG_V3 1556137-1561842 E
           EGN_Mt090430 20090702
          Length = 1508

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 44/71 (61%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           R+  +++A+ + + M+ N C+P++W YN ++ + GR     + E L++++K    +PD V
Sbjct: 348 RESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAV 407

Query: 66  TCTGVISAYNK 76
           T   ++ A++K
Sbjct: 408 TYNSLLYAFSK 418


>IMGA|Medtr2g042470.1 Pentatricopeptide repeat
           chr02_pseudomolecule_IMGAG_V3 11901168-11897956 E
           EGN_Mt090430 20090702
          Length = 1053

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           +KGRI +A  L  +MK  G E + +++  L+D  GRV    +V +L  EM++R I P+ V
Sbjct: 298 KKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVV 357

Query: 66  TCTGVISAYNK 76
           T   V++  +K
Sbjct: 358 TYNAVVNGLSK 368



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 4   MVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPD 63
           + R+G ++DA  +  KM +NG +P   +YN LL    ++  L +  +L  +M+++ I  D
Sbjct: 777 LCREGYLQDAEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFD 836

Query: 64  KVTCTGVISAY 74
             T + VI+ Y
Sbjct: 837 NFTVSSVINCY 847


>IMGA|Medtr2g041460.1 Pentatricopeptide repeat
           chr02_pseudomolecule_IMGAG_V3 11377236-11374342 E
           EGN_Mt090430 20090702
          Length = 849

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVN-SLRQVEKLWKEMKRRK 59
           L    R G+ + A+ +  KMK  G +P +  YN +LD+ G++  +   + +L  EM+ + 
Sbjct: 244 LHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKG 303

Query: 60  IAPDKVTCTGVISA 73
           +  D+ TCT VISA
Sbjct: 304 LEFDEFTCTTVISA 317



 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           L  + ++ R  D ++++  MK+NGC P+   +N +L + G     + V ++ +EMK    
Sbjct: 455 LVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGF 514

Query: 61  APDKVTCTGVISAYNK 76
            PDK T   +ISAY +
Sbjct: 515 EPDKETFNTLISAYGR 530



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           L   VR  ++  A  ++  + V+G +PN+  YN L+D+  RV    + E++ K+++   I
Sbjct: 665 LSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGI 724

Query: 61  APDKVTCTGVISAYNK 76
           +PD V+   VI  + K
Sbjct: 725 SPDVVSYNTVIKGFCK 740


>IMGA|Medtr5g102690.1 Pentatricopeptide repeat
           chr05_pseudomolecule_IMGAG_V3 41118954-41116107 E
           EGN_Mt090430 20090702
          Length = 906

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%)

Query: 4   MVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPD 63
             R+GRI  A+ L+ +MK N    ++ +YN  +D  G+V  +    K + EMK + + PD
Sbjct: 248 FAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPD 307

Query: 64  KVTCTGVIS 72
            VT T +I 
Sbjct: 308 DVTYTTLIG 316


>IMGA|Medtr3g149040.1 Pentatricopeptide repeat
           chr03_pseudomolecule_IMGAG_V3 38905520-38908249 E
           EGN_Mt090430 20090702
          Length = 512

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           R+G+   A  ++  MK NGC PNV+ Y+ L+D   +   L+  + +  EMK   + PD +
Sbjct: 283 REGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAI 342

Query: 66  TCTGVISAYNK 76
           T T +I+ +++
Sbjct: 343 TYTSLINFFSR 353


>IMGA|Medtr2g130030.1 Pentatricopeptide repeat
           chr02_pseudomolecule_IMGAG_V3 31590216-31588790 E
           EGN_Mt090430 20090702
          Length = 404

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 42/71 (59%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           R GR+  A+++  +++ + C+P+V  YN L++  G+   + +    +KEM+ + + PD V
Sbjct: 242 RAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVV 301

Query: 66  TCTGVISAYNK 76
           T + +I  + K
Sbjct: 302 TYSTLIECFGK 312


>IMGA|Medtr1g106200.1 Pentatricopeptide repeat
           chr01_pseudomolecule_IMGAG_V3 22076017-22073753 E
           EGN_Mt090430 20090702
          Length = 518

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 10  IRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTCTG 69
           + DA   V +MK  G EP+V  YN L+D+  +   + +  K++ EM+ + ++PD +T T 
Sbjct: 212 VEDAELFVNEMKEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREKDLSPDVITYTS 271

Query: 70  VISA 73
           VI  
Sbjct: 272 VIGG 275


>IMGA|Medtr1g039940.1 Pentatricopeptide repeat
           chr01_pseudomolecule_IMGAG_V3 9280031-9277752 E
           EGN_Mt090430 20090702
          Length = 662

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%)

Query: 4   MVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPD 63
           + R GR+  AM ++ +M+   C PN+  YN LLD   R N+ R+   L +E++ RK+  D
Sbjct: 464 LCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFD 523

Query: 64  KVTCTGVISAYN 75
            VT   ++  ++
Sbjct: 524 CVTYNTIMYGFS 535


>IMGA|Medtr5g007390.1 Pentatricopeptide repeat
           chr05_pseudomolecule_IMGAG_V3 1084076-1088286 H
           EGN_Mt090430 20090702
          Length = 1084

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           + F+    ++  A  L  +MK NG  P+V+ Y  L+D   +   ++Q  K + EM  +  
Sbjct: 467 IGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGC 526

Query: 61  APDKVTCTGVISAYNK 76
            P+ VT T +I AY K
Sbjct: 527 TPNVVTYTALIHAYLK 542


>IMGA|Medtr4g157210.1 Pentatricopeptide repeat
           chr04_pseudomolecule_IMGAG_V3 39147151-39149374 E
           EGN_Mt090430 20090702
          Length = 732

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%)

Query: 4   MVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPD 63
           + + G I  A  L+ +M   G +PNV+ YN +++   ++ ++ Q  KL +EM      PD
Sbjct: 462 LCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPD 521

Query: 64  KVTCTGVISAYNKL 77
            +T T ++ AY K+
Sbjct: 522 TITYTTLMDAYCKM 535


>IMGA|Medtr5g029600.1 Pentatricopeptide repeat
           chr05_pseudomolecule_IMGAG_V3 12354966-12351943 H
           EGN_Mt090430 20090702
          Length = 731

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 8   GRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTC 67
           G +  A  L  +M   GC PNV  Y   ++   ++N   Q  KL+++MK R + PD++  
Sbjct: 579 GEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILY 638

Query: 68  TGVISAY 74
           T +I+A+
Sbjct: 639 TMLIAAF 645


>IMGA|Medtr3g138450.1 Pentatricopeptide repeat
            chr03_pseudomolecule_IMGAG_V3 35394297-35398369 E
            EGN_Mt090430 20090702
          Length = 1121

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 8    GRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTC 67
            GRI +A++   ++K+ G +P+   YNF+++  G+   L +   L+ EMK R I+PD  T 
Sbjct: 985  GRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTY 1044

Query: 68   TGVI 71
              +I
Sbjct: 1045 NALI 1048


>IMGA|Medtr4g042010.1 Pentatricopeptide repeat
            chr04_pseudomolecule_IMGAG_V3 10055950-10051878 E
            EGN_Mt090430 20090702
          Length = 1121

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 8    GRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTC 67
            GRI +A++   ++K+ G +P+   YNF+++  G+   L +   L+ EMK R I+PD  T 
Sbjct: 985  GRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTY 1044

Query: 68   TGVI 71
              +I
Sbjct: 1045 NALI 1048


>IMGA|Medtr8g042960.1 Pentatricopeptide repeat
           chr08_pseudomolecule_IMGAG_V3 9152970-9150095 H
           EGN_Mt090430 20090702
          Length = 725

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 37/78 (47%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           +     +A+RL   M   G  P V  YN +L        +R   KL  EM  RK+  D V
Sbjct: 315 KANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSV 374

Query: 66  TCTGVISAYNKLTCLLSS 83
           TC  +I+AY K+  L S+
Sbjct: 375 TCNTLINAYCKIGDLNSA 392


>IMGA|Medtr7g107370.1 Pentatricopeptide repeat
           chr07_pseudomolecule_IMGAG_V3 25088643-25089722 H
           EGN_Mt090430 20090702
          Length = 359

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           ++G++ +A R+ ++MK+    PNV  YN L++  G+  +      L++EM+R K+  D +
Sbjct: 141 KEGKLHEANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEEMERNKVKADIL 200

Query: 66  TCTGVISAYNKLTCLLSSSYYSQHKVKGSLL 96
           T  G+I    K      ++Y  +   KG+L+
Sbjct: 201 TYNGLILGLCKEGKTKKAAYMVKELDKGNLV 231


>IMGA|Medtr7g010810.1 Pentatricopeptide repeat
           chr07_pseudomolecule_IMGAG_V3 2431744-2429528 E
           EGN_Mt090430 20090702
          Length = 738

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query: 8   GRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTC 67
           G +  A  L       G  P+   Y  +++   + N L +  +L+K+MK R I PD VT 
Sbjct: 595 GNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTY 654

Query: 68  TGVISAYNKLTCL 80
           T +I+ Y K+ CL
Sbjct: 655 TIMINGYCKMNCL 667


>IMGA|Medtr8g148450.1 Smr protein/MutS2 C-terminal
           chr08_pseudomolecule_IMGAG_V3 36720898-36718691 E
           EGN_Mt090430 20090702
          Length = 706

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 8   GRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTC 67
           G     + +  +MK  G +PN+ +YN LLD  GR     Q   ++KEM    I P++ T 
Sbjct: 300 GNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATY 359

Query: 68  TGVISAYNK 76
             ++ AY +
Sbjct: 360 ASLLHAYGR 368


>IMGA|Medtr8g112280.1 Pentatricopeptide repeat
           chr08_pseudomolecule_IMGAG_V3 25167743-25169963 H
           EGN_Mt090430 20090702
          Length = 724

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           ++F  RKG+I++A+    +M +  C+P+V+ YN ++++        Q  K++  MK +K+
Sbjct: 38  MRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKV 97

Query: 61  APDKVTCTGVISAY 74
             D  T T  I ++
Sbjct: 98  ESDVYTYTIRIKSF 111


>IMGA|AC234703_7.1 pentatricopeptide, related AC234703.1 43858-47785
           E EGN_Mt090430 20090702
          Length = 639

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 41/68 (60%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           + GR+ DA  +   M  +GC+P+V + N L+++ GR + L++  +L++EM+     P+ V
Sbjct: 313 KSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVV 372

Query: 66  TCTGVISA 73
           T   +I +
Sbjct: 373 TYNTIIKS 380


>IMGA|Medtr2g123230.1 Pentatricopeptide repeat
           chr02_pseudomolecule_IMGAG_V3 29786981-29790907 E
           EGN_Mt090430 20090702
          Length = 639

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 41/68 (60%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           + GR+ DA  +   M  +GC+P+V + N L+++ GR + L++  +L++EM+     P+ V
Sbjct: 313 KSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVV 372

Query: 66  TCTGVISA 73
           T   +I +
Sbjct: 373 TYNTIIKS 380