Jatropha Genome Database

JcCB0065721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065721.10 - phase: 0 
         (105 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g017990.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3 655...    79   6e-16

>IMGA|Medtr5g017990.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3
          6557466-6553115 E EGN_Mt090430 20090702
          Length = 344

 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 52/58 (89%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLETL 58
          MVS+S+L+ RLRE L++SDL+T T  ++RR+LE +FG++LSDRK+FIREQ+D++L+T+
Sbjct: 1  MVSESELIDRLREFLRNSDLNTTTTSTVRRQLESDFGIDLSDRKSFIREQVDLFLQTV 58