Jatropha Genome Database

JcCB0065691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065691.10 - phase: 0 
         (133 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g074660.1 Target SNARE coiled-coil region chr05_pseud...   206   3e-54
IMGA|Medtr5g074660.2 Bet1-like protein At4g14600, putative chr05...   105   7e-24

>IMGA|Medtr5g074660.1 Target SNARE coiled-coil region
           chr05_pseudomolecule_IMGAG_V3 26996178-26993779 F
           EGN_Mt090430 20090702
          Length = 132

 Score =  206 bits (524), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 115/131 (87%), Gaps = 2/131 (1%)

Query: 1   MAASSSRGGSFYGGAAPYRSKDGLSTRPAASSDEIQLRIDPMHADFDDEISGLRSQVKQL 60
           MAA+S R  S YGGA P+RS DGLSTRP A+SDEIQLRIDPM  D DDE++GL +QV++L
Sbjct: 1   MAANSHRAASSYGGAVPFRSSDGLSTRPGAASDEIQLRIDPM--DLDDELTGLHTQVRRL 58

Query: 61  RNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLFALL 120
           +NVA+EIG+E K+QKDFL+QLQMT+IKAQAGVKNN+R+LNKSII++G NHIVHV+ FAL+
Sbjct: 59  KNVAEEIGTEMKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVICFALI 118

Query: 121 CFTVVYLWSKV 131
           CF VVY WSK+
Sbjct: 119 CFFVVYFWSKM 129


>IMGA|Medtr5g074660.2 Bet1-like protein At4g14600, putative
           chr05_pseudomolecule_IMGAG_V3 26994793-26993779 F
           EGN_Mt090430 20090702
          Length = 64

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 56/60 (93%)

Query: 72  KFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLFALLCFTVVYLWSKV 131
           K+QKDFL+QLQMT+IKAQAGVKNN+R+LNKSII++G NHIVHV+ FAL+CF VVY WSK+
Sbjct: 2   KYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVICFALICFFVVYFWSKM 61