Jatropha Genome Database

JcCB0064411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064411.20 - phase: 1 /pseudo/partial
         (199 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g139750.1 IQ calmodulin-binding region chr03_pseudomo...   125   1e-29
IMGA|Medtr2g120920.1 IQ calmodulin-binding region chr02_pseudomo...    50   5e-07

>IMGA|Medtr3g139750.1 IQ calmodulin-binding region
           chr03_pseudomolecule_IMGAG_V3 36054035-36056384 E
           EGN_Mt090430 20090702
          Length = 445

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 97/148 (65%), Gaps = 9/148 (6%)

Query: 47  VKVRKNNVSTRISAKPP--IGQVTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTGLAS 104
           VKV+KNNV+TRISAKPP  IGQ TR                            GNT    
Sbjct: 300 VKVKKNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNT---C 356

Query: 105 DRTEESGNS-KPNYMNLTESTKAKRKT-TNHLSHRIQRQ-SMDEFQFLKRSAAFSNEDSK 161
           +RTE+S NS +PNYMNLT+STKAK K+ +N + +R QRQ SMDEFQF+KR+A FSN DSK
Sbjct: 357 ERTEDSCNSTRPNYMNLTKSTKAKLKSGSNQMYNRAQRQQSMDEFQFMKRAAVFSNGDSK 416

Query: 162 SSAGSDHPSINLSKPLCLPTRLDKNSMK 189
           S A SDH S+N S+PL LPT+ DK+S++
Sbjct: 417 SIAASDH-SLNFSRPLRLPTQSDKSSVR 443


>IMGA|Medtr2g120920.1 IQ calmodulin-binding region
           chr02_pseudomolecule_IMGAG_V3 28596826-28593701 E
           EGN_Mt090430 20090702
          Length = 416

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 107 TEESGNSKPNYMNLTESTKAKRKTTNHLSHRIQRQSMDEFQFLKRSAAFSNEDSKSSAGS 166
           TEE     P+YMNLTESTKAK KT    S   +R  MD+      S  F N D+  ++  
Sbjct: 319 TEEKDAHLPSYMNLTESTKAKLKTYRSSSQSSKRLVMDDCMSHNTSTTFLNGDNSINSSG 378

Query: 167 DHPSINLSKPLC---LPTRLDKNSMKQ 190
             PS+NL K  C   L   L KNS+ +
Sbjct: 379 SEPSVNLWKDHCATPLRASLVKNSVTE 405