Jatropha Genome Database

JcCB0064191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.20 + phase: 0 
         (185 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100690.1 hypothetical protein chr03_pseudomolecule_I...    60   9e-10

>IMGA|Medtr3g100690.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 24161847-24161156 E
           EGN_Mt090430 20090702
          Length = 169

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 93  WRFEQPTRVRPECV-SPGCFPSPLLKRKDSKRRTVQLPESETDYTSDLETLARWSLSS-- 149
           WRFE+P   +PECV S GCF SP LKR  S R+ V     E DYT +LET+ RWS SS  
Sbjct: 74  WRFERPLLAQPECVTSSGCFFSPFLKRLRS-RKKVVKKVVEPDYTLELETIGRWSFSSST 132

Query: 150 -RKXXXXXXXXXXXXXXXXXXXXXXXXEAEWAGFGLF 185
            +                         +AEWAGFGLF
Sbjct: 133 TKSLSPFRRPSTVSSSVASSPQPQPVGDAEWAGFGLF 169