Jatropha Genome Database

JcCB0064191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.10 + phase: 1 /partial
         (205 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100710.1 AAA ATPase, central region chr03_pseudomole...   247   3e-66
IMGA|Medtr3g100750.1 AAA ATPase, central region chr03_pseudomole...    56   1e-08

>IMGA|Medtr3g100710.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24169522-24164910 E
           EGN_Mt090430 20090702
          Length = 339

 Score =  247 bits (631), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 136/156 (87%), Gaps = 1/156 (0%)

Query: 13  NY-GKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSSISQGDLRR 71
           NY  +IIEPLASRCAKFRFKPL+E+IMS RI+YICKEEG+ +DAE LSTLS+ISQGDLRR
Sbjct: 153 NYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRR 212

Query: 72  AITYLQGAARLFGSTISSKDLISVSGVIPKEFLGAFYAACKSGDFDLANKEVNNIIAEGY 131
           AITYLQ AARLFGS+ISSKDLISVSG++P E + A   AC+SG+FDLANKEVNN IAEGY
Sbjct: 213 AITYLQSAARLFGSSISSKDLISVSGIVPAEVVEALLKACRSGNFDLANKEVNNFIAEGY 272

Query: 132 PVSQMLVQLFDLVVEADDISDEQKARICKSLAAADK 167
           PVSQML QLF+ +VE +DISDEQKARI K L  ADK
Sbjct: 273 PVSQMLTQLFEAIVEENDISDEQKARISKKLGEADK 308


>IMGA|Medtr3g100750.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24245152-24251862 F
           EGN_Mt090430 20090702
          Length = 355

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 43/74 (58%)

Query: 4   SAKFKESQDNYGKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSS 63
           S +F    ++  KII  L SRC +FRF PL    +++R+ ++   E L++    LS L  
Sbjct: 162 STRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVR 221

Query: 64  ISQGDLRRAITYLQ 77
           +S GD+R+A+  LQ
Sbjct: 222 LSNGDMRKALNILQ 235