Jatropha Genome Database

JcCB0063711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0063711.10 - phase: 2 /partial
         (394 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g119840.1 hypothetical protein chr08_pseudomolecule_I...   436   e-122

>IMGA|Medtr8g119840.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 27274651-27280812 E
           EGN_Mt090430 20090702
          Length = 660

 Score =  436 bits (1120), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/370 (60%), Positives = 281/370 (75%), Gaps = 7/370 (1%)

Query: 26  QVFDMVNREAFNQSLGVNVTGIQENYLQLSISTGTSVFLSLVPSVEDEQTADGG-GHQIS 84
           QVFD+VNREAFN S G  +TGI+ENYLQLS+  GTSV+LSLV + +D  T +G   +   
Sbjct: 292 QVFDLVNREAFNTSTGFTLTGIRENYLQLSLGQGTSVYLSLVSTGQDNPTVEGELTNNAD 351

Query: 85  ETAVLPLDSIDEVKLPEEKHVYLHKKSRFPNRISCEIYLQQIFHEHVFLKAKDRPLPTGT 144
           + A  PL+S D V + + +   L KK R  N    EIY+QQI+HEH+F +  ++P+ +G 
Sbjct: 352 DNAFSPLESSD-VLMHDAQQNTLKKKGRHSNSTCYEIYIQQIYHEHIFGRGSEKPISSGN 410

Query: 145 RVS-SQLKDGSGLLGHFCMTVAHRIFSNKVLMELENVICKVPYLHLISHPTWHSRTSSWT 203
           R+S +Q KDGS LL HF M++AHRIFS K+L ELENV+ KVPYL LIS+PTWHSR SSWT
Sbjct: 411 RLSGAQAKDGSYLLSHFFMSLAHRIFSTKILAELENVVFKVPYLQLISNPTWHSRGSSWT 470

Query: 204 IFMKVPQSILHASSHSQTSDMKSMKSDIKTEFRTKVVVNDDSINVEAEGAPNVVGLFKGS 263
           +FM+VP SIL      +TSD ++  + IK +F TKVVV DD I+V+AEG+PNV GLFKG 
Sbjct: 471 LFMEVPPSILRGC-QVKTSDFEN--NAIKRQFWTKVVVIDDCISVKAEGSPNVSGLFKGK 527

Query: 264 SDDTCSMNKYDCDLADLPAIILQQVASQVIRWLHEEALTVGIKANRDFLSLSFELDQGEV 323
           S+DT S+NKYDC+LADLP IILQQVASQ+I WL+ EAL VGIKANRDFL LSFEL+QGE 
Sbjct: 528 SEDTHSINKYDCNLADLPVIILQQVASQIINWLYHEALMVGIKANRDFLCLSFELEQGET 587

Query: 324 LSMVAHVDPEDVEGCISWWLVMEDGFAE-KKLHMDIADDASECRKFLGYLPLDVLYSTLM 382
           L +VA+VDP+D +GCISW LVMED FAE +KLH ++ D ASE RKFLG L L++LY+TL+
Sbjct: 588 LGLVANVDPKDSDGCISWSLVMEDSFAEVQKLHTNLTDGASEYRKFLGPLSLELLYATLI 647

Query: 383 DLVTLCSGGG 392
           DL+   SGGG
Sbjct: 648 DLIAFVSGGG 657