Jatropha Genome Database

JcCB0062531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0062531.10 - phase: 0 
         (124 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g043570.1 VQ chr08_pseudomolecule_IMGAG_V3 9459122-94...    48   1e-06

>IMGA|Medtr8g043570.1 VQ chr08_pseudomolecule_IMGAG_V3
          9459122-9459648 F EGN_Mt090430 20090702
          Length = 118

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 31/39 (79%), Gaps = 1/39 (2%)

Query: 29 ITYISNPTMVRATNASEFRAIVQELTGKDSKILDSWDIP 67
          +TYIS+P  V+ TNAS FRA+VQELTG+DS + ++  +P
Sbjct: 16 VTYISSPVKVK-TNASNFRALVQELTGQDSNVAETTTMP 53