Jatropha Genome Database

JcCB0062371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0062371.10 + phase: 0 
         (250 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g120670.1 Zinc finger, FYVE/PHD-type chr02_pseudomole...   292   1e-79
IMGA|AC235756_22.1 Zinc finger, FYVE/PHD-type AC235756.1 164740-...   261   3e-70
IMGA|Medtr1g019450.1 PHD finger protein At5g26210, putative chr0...   161   3e-40
IMGA|Medtr8g077790.1 PHD finger protein At5g26210, related chr08...    95   3e-20
IMGA|Medtr1g019440.1 hypothetical protein chr01_pseudomolecule_I...    57   7e-09

>IMGA|Medtr2g120670.1 Zinc finger, FYVE/PHD-type
           chr02_pseudomolecule_IMGAG_V3 28441848-28445607 E
           EGN_Mt090430 20090702
          Length = 250

 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/245 (60%), Positives = 164/245 (66%), Gaps = 5/245 (2%)

Query: 10  RTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXXXXXXXXXXX 69
           RTVE++F DFK RR G+IKALT DVE+FY+QCDPEKENLCLYG  NE W           
Sbjct: 6   RTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPP 65

Query: 70  XXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMIND 129
                  GINFARDGMQEKDWL+LVAVHSD WLL++AFYFGARFGFDKADRKRLF +IN+
Sbjct: 66  EIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINE 125

Query: 130 LPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXXXFSKGQ----PKXXXXXXX 185
           LPT+FEVVTG+ KKQ K+                          + +    PK       
Sbjct: 126 LPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALLPKDEEEELE 185

Query: 186 XXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC-S 244
                      CGACG++  ADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC S
Sbjct: 186 EQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSS 245

Query: 245 NKRAR 249
           NKRAR
Sbjct: 246 NKRAR 250


>IMGA|AC235756_22.1 Zinc finger, FYVE/PHD-type AC235756.1
           164740-161152 E EGN_Mt090430 20090702
          Length = 238

 Score =  261 bits (666), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 130/243 (53%), Positives = 154/243 (63%), Gaps = 8/243 (3%)

Query: 8   NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXXXXXXXXX 67
           +PRTVEE+F+DF  RR G+++ALT DV+EFY  CDP+K+NLCLYG  NE W         
Sbjct: 4   SPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHTNESWEVTLPAEEV 63

Query: 68  XXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMI 127
                    GINFARDGM  +DWLSLVAVHSD+WLL+VAFY GAR   ++ +RKRLF++I
Sbjct: 64  PPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARL--NRNERKRLFSLI 121

Query: 128 NDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXXXFSKGQPKXXXXXXXXX 187
           N+LPT+FEVVT   +K  KD                          K  PK         
Sbjct: 122 NELPTVFEVVTD--RKPIKDKPTVDSGSKSRGSTKRSSDGQV----KSNPKLVDDQGYEE 175

Query: 188 XXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKR 247
                  TLCG+CG NY ADEFWI CDICE+W+HGKCVKITPA+AE IKQYKCPSCS KR
Sbjct: 176 EEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSIKR 235

Query: 248 ARP 250
            RP
Sbjct: 236 GRP 238


>IMGA|Medtr1g019450.1 PHD finger protein At5g26210, putative
           chr01_pseudomolecule_IMGAG_V3 3937131-3940542 E
           EGN_Mt090430 20090702
          Length = 208

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 82/104 (78%)

Query: 44  EKENLCLYGFPNEQWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLL 103
           +KENLCLYGFP+EQW                  GINFARDGMQEKDWLSLVAVHSDAWLL
Sbjct: 35  KKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLL 94

Query: 104 AVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSVKKQAKD 147
           +VAFYFGARFGFDKADRKRLF MINDLPTIFE VTGS +KQ K+
Sbjct: 95  SVAFYFGARFGFDKADRKRLFNMINDLPTIFEAVTGSGRKQGKE 138


>IMGA|Medtr8g077790.1 PHD finger protein At5g26210, related
           chr08_pseudomolecule_IMGAG_V3 15614404-15612864 H
           EGN_Mt090430 20090702
          Length = 175

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 67/133 (50%), Gaps = 18/133 (13%)

Query: 120 RKRLFTMINDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXX-XXXXXFSKGQPK 178
           RKRLFT INDLPTIFEVVTGS KKQ K+                         +SK   K
Sbjct: 29  RKRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAK 88

Query: 179 XXXXXXXXXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVK-ITPARAEHIKQ 237
                             C ACGENY             KW+HGKCVK ITPA+AE IKQ
Sbjct: 89  EDDEEVDDEEEYQGE---CTACGENY-------------KWYHGKCVKKITPAQAEQIKQ 132

Query: 238 YKCPSCSNKRARP 250
           Y+CP+C+NKR RP
Sbjct: 133 YRCPTCNNKRVRP 145


>IMGA|Medtr1g019440.1 hypothetical protein
          chr01_pseudomolecule_IMGAG_V3 3932371-3931452 E
          EGN_Mt090430 20090702
          Length = 89

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/29 (89%), Positives = 27/29 (93%)

Query: 4  GAQYNPRTVEEVFRDFKGRRAGMIKALTT 32
          GA YNPRTVEEVFRDFKGRRA +IKALTT
Sbjct: 5  GAPYNPRTVEEVFRDFKGRRAALIKALTT 33