Jatropha Genome Database

JcCB0061781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061781.10 + phase: 0 /partial
         (178 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g025950.1 Endonuclease/exonuclease/phosphatase chr02_...   244   1e-65

>IMGA|Medtr2g025950.1 Endonuclease/exonuclease/phosphatase
           chr02_pseudomolecule_IMGAG_V3 6996207-6991288 E
           EGN_Mt090430 20090702
          Length = 356

 Score =  244 bits (624), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 112/148 (75%), Positives = 128/148 (86%)

Query: 1   ENWRMKQINAIIQSNDGPHILAGGLNSLDETDYSAERWTDIVKYYEEMGKPTPKVEVMRF 60
           ENWRMKQ+NAII+SND PHILAGGLNSL   DYS++RWTDIV YYE++GKP P  EVM F
Sbjct: 189 ENWRMKQVNAIIRSNDPPHILAGGLNSLYRADYSSQRWTDIVNYYEKLGKPRPMTEVMNF 248

Query: 61  LKSKHYSDAKEFAGECESVVMIAKGQNVQGTCKYGTRVDYILASSNSPYKFVPGSYSVFS 120
           +KSK Y DAK++AGECE +V+IAKGQNVQGTCKYGTRVDYIL SS SPYKFVPGSYSV S
Sbjct: 249 MKSKDYDDAKDYAGECEPIVIIAKGQNVQGTCKYGTRVDYILGSSKSPYKFVPGSYSVIS 308

Query: 121 SKGTSDHHIVKVDMIKMNGGDQENVLTR 148
           SKGTSDHHIVKVD++K+N   Q NV+ +
Sbjct: 309 SKGTSDHHIVKVDIMKVNTSTQNNVIKQ 336