Jatropha Genome Database

JcCB0061481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061481.10 - phase: 2 /partial
         (117 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g019710.1 Sin-like protein conserved region chr05_pse...   100   1e-22

>IMGA|Medtr5g019710.1 Sin-like protein conserved region
           chr05_pseudomolecule_IMGAG_V3 7377933-7384127 E
           EGN_Mt090430 20090702
          Length = 443

 Score =  100 bits (250), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/110 (50%), Positives = 73/110 (66%), Gaps = 4/110 (3%)

Query: 1   FELIRQGLRDLAVSQSTLPKADPRIAKLAADGADAPLEELQEIISEVATNIHGSYVLKSS 60
           F+LI Q LR LA++Q+ LPK   +++  AA+  D P +EL+ I+ EVA +IHG YVLKS+
Sbjct: 315 FQLICQELRGLALAQTMLPKGGSKMSVDAANSLDVPQDELKAILGEVACDIHGCYVLKSA 374

Query: 61  PDHPQYDVLRKVVIDLLLARGPNAKLKKSEVYEAAKLVLKRDINTTEYTK 110
               Q D  R VVID+L   GPN KLKK+E+ EAA+  L RD+   EY K
Sbjct: 375 ----QNDPFRDVVIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIK 420