Jatropha Genome Database

JcCB0061321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061321.20 + phase: 2 /TE/partial
         (413 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g114890.1 gag-pol polyprotein, related chr04_pseudomo...    79   6e-15
IMGA|Medtr1g102740.1 gag-pol polyprotein, related chr01_pseudomo...    67   1e-11
IMGA|Medtr1g102780.1 gag-pol polyprotein, related chr01_pseudomo...    67   2e-11
IMGA|Medtr5g046390.1 gag-pol polyprotein, related chr05_pseudomo...    67   2e-11
IMGA|Medtr6g086660.1 gag-pol polyprotein, related chr06_pseudomo...    64   2e-10
IMGA|Medtr6g086670.1 gag-pol polyprotein, related chr06_pseudomo...    63   3e-10

>IMGA|Medtr4g114890.1 gag-pol polyprotein, related
           chr04_pseudomolecule_IMGAG_V3 26420343-26419721 E
           EGN_Mt090430 20090702
          Length = 183

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 292 FMSHQKKHIWNLASGCTNHMAKDECFFISLDRSVTTKVRMGNGEIIQVDGKSSVELQTMK 351
           F + Q    W + SGCT+HM  D   F  L++S  +KVRM NG  I+V+G  +V +++  
Sbjct: 4   FATKQPSKYWLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHS 63

Query: 352 -VXFLSNVLLVPNLDQNLLSIAQLVKEGYYMIFKSGSCVI 390
               +SNVL  P L+Q+LLS+ QL+ +GY ++F+   CVI
Sbjct: 64  GYKQISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVI 103


>IMGA|Medtr1g102740.1 gag-pol polyprotein, related
           chr01_pseudomolecule_IMGAG_V3 21153367-21155226 E
           EGN_Mt090430 20090702
          Length = 234

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 292 FMSHQKKHIWNLASGCTNHMAKDECFFISLDRSVTTKVRMGNGEIIQVDGKSSVELQT-- 349
           F +    + W + SGCT H   D   F  L ++  TK  + NG  I ++G  +VE+++  
Sbjct: 4   FTTKTPSNFWVVDSGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRS 63

Query: 350 -MKVXFLSNVLLVPNLDQNLLSIAQLVKEGYYMIFKSGSCVI 390
            +K+  L+NV  +P    +LLS+A L++EGY ++FK   C+I
Sbjct: 64  GVKL-ILNNVNYIPENCYSLLSVAGLLEEGYQVLFKRNKCLI 104


>IMGA|Medtr1g102780.1 gag-pol polyprotein, related
           chr01_pseudomolecule_IMGAG_V3 21184395-21181931 E
           EGN_Mt090430 20090702
          Length = 311

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 292 FMSHQKKHIWNLASGCTNHMAKDECFFISLDRSVTTKVRMGNGEIIQVDGKSSVELQT-- 349
           F +    + W + SGCT H   D   F  L ++  TK  + NG  I ++G  +VE+++  
Sbjct: 27  FTTKTPSNFWVVESGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRS 86

Query: 350 -MKVXFLSNVLLVPNLDQNLLSIAQLVKEGYYMIFKSGSCVI 390
            +K+  L+NV  +P    +LLS+A L++EGY ++FK   C+I
Sbjct: 87  GVKL-ILNNVNYIPENCYSLLSVAGLLEEGYQVLFKRNKCLI 127


>IMGA|Medtr5g046390.1 gag-pol polyprotein, related
           chr05_pseudomolecule_IMGAG_V3 19508075-19507539 H
           EGN_Mt090430 20090702
          Length = 178

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 297 KKHIWNLASGCTNHMAKDECFFISLDRSVTTKVRMGNGEIIQVDGKSSVELQTMK-VXFL 355
           K  +W + SG TN++  D   F  LD+S ++ +R+ NG  I  +G  ++  +       +
Sbjct: 8   KPSLWLIDSGATNNLTCDREVFTELDKSYSSVIRVANGAEITSEGIGTIVFKNHSGSKLV 67

Query: 356 SNVLLVPNLDQNLLSIAQLVKEGYYMIFKSGSCVIMIHTIQRLLK 400
            NVL VP + +NLLS+ QL+K GY ++F+  SC+I     + + K
Sbjct: 68  LNVLYVPQISENLLSVPQLLKNGYKVLFEHESCMINDQNNEEVFK 112


>IMGA|Medtr6g086660.1 gag-pol polyprotein, related
           chr06_pseudomolecule_IMGAG_V3 17762174-17761410 H
           EGN_Mt090430 20090702
          Length = 254

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 299 HIWNLASGCTNHMAKDECFFISLDRSVTT-KVRMGNGEIIQVDGKSSVELQTMK-VXFLS 356
           + W + SG T+HM  D   F  L++++ +  + +GNG  I+V+G  +V ++    +  + 
Sbjct: 11  NFWYIDSGATHHMTYDRSLFKELNKTIISCNIIVGNGAPIEVEGFGTVTIKHHSGLKLIL 70

Query: 357 NVLLVPNLDQNLLSIAQLVKEGYYMIFKSGSCVI 390
           NV  VP L  +LLS+ QL++EGY++ F   SC I
Sbjct: 71  NVFYVPKLTSSLLSVPQLLEEGYHVFFIHNSCEI 104


>IMGA|Medtr6g086670.1 gag-pol polyprotein, related
           chr06_pseudomolecule_IMGAG_V3 17772429-17771671 H
           EGN_Mt090430 20090702
          Length = 252

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 299 HIWNLASGCTNHMAKDECFFISLDRS-VTTKVRMGNGEIIQVDGKSSVELQTMK-VXFLS 356
           + W++ SG T+HM  D  FF  L+++ ++    + NG  I+V+G  ++ ++    +  + 
Sbjct: 11  NFWHIDSGATHHMTYDRNFFKELNKTAISYNFIVANGAPIEVEGIGTITIRNHSGLKLIL 70

Query: 357 NVLLVPNLDQNLLSIAQLVKEGYYMIFKSGSCVI 390
           NVL VPNL  ++LS+ QL++EG+++ F   +C I
Sbjct: 71  NVLYVPNLTSSVLSVPQLLEEGFHVFFIHKACFI 104