Jatropha Genome Database

JcCB0061321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061321.10 + phase: 0 /pseudo/partial
         (100 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g123290.1 Ubiquitin; Ribosomal protein L40e chr03_pse...    59   6e-10

>IMGA|Medtr3g123290.1 Ubiquitin; Ribosomal protein L40e
           chr03_pseudomolecule_IMGAG_V3 30889444-30886075 E
           EGN_Mt090430 20090702
          Length = 128

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 3/62 (4%)

Query: 39  NLCLVLSLREGIVNHLSWLWLA-NIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSK 96
            L LVL LR GI+   S + LA    +DK ICRKC +R+HP AVNC KKKCGHS+  R K
Sbjct: 66  TLHLVLRLRGGIIEP-SLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQLRPK 124

Query: 97  RK 98
           +K
Sbjct: 125 KK 126