Jatropha Genome Database

JcCB0060901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060901.10 + phase: 0 /partial
         (290 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g125250.1 nucleotide binding, putative chr04_pseudomo...   451   e-127

>IMGA|Medtr4g125250.1 nucleotide binding, putative
           chr04_pseudomolecule_IMGAG_V3 29500029-29511825 E
           EGN_Mt090430 20090702
          Length = 835

 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/290 (75%), Positives = 251/290 (86%)

Query: 1   MNASSCKVALSKDLRHMIVMCSGELNDNMVGSRENQMAGDVMHGSHGLVLDTSIFSKRKS 60
           +NA   KVALSKDL  +IVMCSG+L + +       MAG   +G H L L+T+IF  RK+
Sbjct: 220 LNACIHKVALSKDLCRLIVMCSGDLVEVVDDLGVIHMAGHNANGLHCLALNTAIFWNRKN 279

Query: 61  ELHQLAQQASNIEELTEVIRASLSVMSTQWSDAMRVFHEKFDSLSNLIVDHALDSSPQEE 120
           ELHQ+AQQASNIE+LTEV+RASLSVMS QWSDAM  F EKF+SLS LI DH LDSSPQEE
Sbjct: 280 ELHQVAQQASNIEDLTEVVRASLSVMSRQWSDAMHTFKEKFNSLSTLITDHGLDSSPQEE 339

Query: 121 FLSLLGGARTSPAVHQFLVNTLGEVGVKRVSKVVCGAGKELQRIVLDHIQPAAEIIAFRM 180
           FL LLGGARTSP VHQFLV+TLGEVGVKR+SKV+CGAGKELQRIVL+H+QPA E+I FRM
Sbjct: 340 FLGLLGGARTSPPVHQFLVSTLGEVGVKRISKVLCGAGKELQRIVLEHLQPAVEVIGFRM 399

Query: 181 GELRGLSRWRARYQGIGLDEMLINNATEKSGMMLVQIERFMRVLSSVEQQFSNFFNWLLK 240
           GELRGLSRWRARY GIGLDE LI+NATEK+GM+LVQ+ERFMRVLSSV QQ+SNFFNWLLK
Sbjct: 400 GELRGLSRWRARYHGIGLDEPLISNATEKAGMLLVQVERFMRVLSSVLQQYSNFFNWLLK 459

Query: 241 CIKLLMQEPSDQLLPYNSELVVIFLKFLYDQDPVRQLLELSEVSHNIEVD 290
           CIKLLM EPSDQLLPYNSELV+IFLKFLY+QDPV+QLLE+SE  +++E+D
Sbjct: 460 CIKLLMSEPSDQLLPYNSELVIIFLKFLYEQDPVKQLLEISETDYDVEID 509