Jatropha Genome Database

JcCB0060001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060001.20 - phase: 0 
         (230 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g028170.1 GAGA binding-like chr01_pseudomolecule_IMGA...   152   1e-37
IMGA|Medtr4g151960.1 GAGA binding-like chr04_pseudomolecule_IMGA...   139   9e-34

>IMGA|Medtr1g028170.1 GAGA binding-like
           chr01_pseudomolecule_IMGAG_V3 6786561-6782733 E
           EGN_Mt090430 20090702
          Length = 340

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 84/107 (78%)

Query: 124 DVDIDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTRAGAR 183
           D+ ++   +D S +P+P CSCTG+ R CYKWG GGWQS+CCTT +S YPLP    +  AR
Sbjct: 234 DLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHAR 293

Query: 184 MAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
           + GRKMS  A+ KLL RLAAEG+DLSHPVDLK+HWA+HGTN+++TIK
Sbjct: 294 VGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 340


>IMGA|Medtr4g151960.1 GAGA binding-like
           chr04_pseudomolecule_IMGAG_V3 37540027-37538515 E
           EGN_Mt090430 20090702
          Length = 356

 Score =  139 bits (351), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 80/107 (74%)

Query: 124 DVDIDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTRAGAR 183
           DV ++   FD + +P P C+CTG+ R CYKWG GGWQSSCCTT +S +PLP    +  AR
Sbjct: 250 DVGLNSIAFDETVMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHAR 309

Query: 184 MAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
           + GRKMS   + +LL R A+EG+DLS P+DLK++WARHGTN+++TIK
Sbjct: 310 IGGRKMSGNVFRRLLSRFASEGHDLSIPLDLKDYWARHGTNRYITIK 356