Jatropha Genome Database

JcCB0059751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059751.10 + phase: 0 /pseudo/partial
         (249 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g103080.1 Phosphoribosyltransferase chr08_pseudomolec...   293   4e-80

>IMGA|Medtr8g103080.1 Phosphoribosyltransferase
           chr08_pseudomolecule_IMGAG_V3 22890648-22894795 E
           EGN_Mt090430 20090702
          Length = 396

 Score =  293 bits (751), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 143/150 (95%), Positives = 145/150 (96%)

Query: 100 LPVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMI 159
           L VVSPDVGGVARARAFAKKLSDAPLAIVDKRR GHNVAEVMNLIGDVKGKVAVMVDDMI
Sbjct: 247 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRSGHNVAEVMNLIGDVKGKVAVMVDDMI 306

Query: 160 DTAGTIAKGAALLHHEGAREVYACCTHAVFSPPAIERLSSGLFQEVIITNTIPVAEKNYF 219
           DTAGTIAKGAALLH EGAREVYACCTH VFSPPAIERLSSGLFQEVIITNTIPVAEKNYF
Sbjct: 307 DTAGTIAKGAALLHEEGAREVYACCTHGVFSPPAIERLSSGLFQEVIITNTIPVAEKNYF 366

Query: 220 PQLTVLSVANLLGETIWRIHDDCSVSSIFQ 249
           PQLT+L+VANLLGETIWRIHDD SVSSIFQ
Sbjct: 367 PQLTILTVANLLGETIWRIHDDSSVSSIFQ 396



 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 47/49 (95%)

Query: 1   VRGCDVYLLQPTCPSANENLMELLIMIDACRRASAKNITAVIPYFGYAR 49
           VRGC+VYL+QPTCP ANENLMEL +MIDACRRASAKNITAVIPYFGYAR
Sbjct: 123 VRGCNVYLIQPTCPPANENLMELQVMIDACRRASAKNITAVIPYFGYAR 171