Jatropha Genome Database

JcCB0059061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059061.10 + phase: 0 /partial
         (246 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g065690.1 Excinuclease ABC, C subunit, N-terminal; Mu...   285   1e-77

>IMGA|Medtr1g065690.1 Excinuclease ABC, C subunit, N-terminal; MutS 1
            protein chr01_pseudomolecule_IMGAG_V3 13157439-13142729 E
            EGN_Mt090430 20090702
          Length = 1224

 Score =  285 bits (730), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 174/238 (73%), Gaps = 2/238 (0%)

Query: 1    MGTEYVNGQTKPTWRLIDGICKESLAFETAKKEGIPETIVQRAEELYFSAYAKKVSPERI 60
            MGT  ++GQTKPTW L DG+CKESLAFETAK+EGIPE I+QRAE+LY S YAKK      
Sbjct: 987  MGTTCIDGQTKPTWMLTDGVCKESLAFETAKREGIPEIIIQRAEDLYLSVYAKKTLSAEN 1046

Query: 61   EERKRPIHSSGTVNGSNEAHFALTEATARALHHDTKSAKEMEVMQKKDVESAVTLICQRK 120
              ++  + S    N SN  H +  +  +R        A  +EV   K+VESA+T+ICQ  
Sbjct: 1047 YAKQEELSSYINGNNSNGTHHS-EKFLSRISQEGISLANPIEV-SHKEVESAITVICQDF 1104

Query: 121  LIELYKQKNTAELETVQCVAIGAREQPPPSTIGASCVYIMFRPDKRLYVGVTDDLEGRVH 180
            + EL ++K T+EL  ++C  IG RE PPP TIG+S VY+M RPDK+LYVG TD+LE RV 
Sbjct: 1105 IAELRRKKITSELIKIKCFLIGTREWPPPMTIGSSSVYVMLRPDKKLYVGETDNLEDRVR 1164

Query: 181  AHRSKEGMYNASFLYFIVKGKSIACQLETLLINQLPRKGFQLSNIADGKHRNFGTSNL 238
            AHRSKEGM +ASFLYF+V GKS+ACQ+ETLLINQLP +GF LSNIADGKHRNFGTSN+
Sbjct: 1165 AHRSKEGMQDASFLYFLVPGKSLACQIETLLINQLPNRGFLLSNIADGKHRNFGTSNV 1222