Jatropha Genome Database

JcCB0058711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058711.10 - phase: 0 
         (363 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g140130.1 S-adenosylmethionine decarboxylase chr08_ps...   219   2e-57
IMGA|Medtr2g026090.1 S-adenosylmethionine decarboxylase chr02_ps...   217   8e-57

>IMGA|Medtr8g140130.1 S-adenosylmethionine decarboxylase
           chr08_pseudomolecule_IMGAG_V3 34332981-34331643 E
           EGN_Mt090430 20090702
          Length = 346

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/349 (37%), Positives = 192/349 (55%), Gaps = 21/349 (6%)

Query: 14  GFEGFEKRLEITF--NEPPIFKDPTGRGLRALTRSQLDSILEPACCTIVTQLSNSEFDSY 71
           GFEGFEKRLE+ F  ++P  F+     GLR +    +  +LE   CT+V+ + NS FD+Y
Sbjct: 5   GFEGFEKRLELHFFGDDPITFQ----LGLRKIDFESIQQVLEAVQCTVVSAVGNSYFDAY 60

Query: 72  VLSESSLFVFPFKIVLKTCGTTXXXXXXXXXXXXXXXXXXXXFDVNYSRGSFIFPNYQPA 131
           VLSESSLFV+P KI++KTCGTT                        Y+RGSFIFPN QP 
Sbjct: 61  VLSESSLFVYPTKIIIKTCGTTQLLKSILPLIHYANQTGLTLCSCRYTRGSFIFPNAQPF 120

Query: 132 PHRSFSEEVTALNEFF-GHLKTEAYVLGGSSAPNWNWHIYSASSG---SSQPLMKDHTDT 187
           P+ SF++EVT L +    +L      +  S + + +WH+++A S     +        D 
Sbjct: 121 PYTSFNDEVTYLEDTIPSNLCHRKASIMPSKSSSHSWHVFTAHSSITHHNHSHTHSDIDI 180

Query: 188 LNVEICMTGLEKKKAAVFFK-----RSADYSASDMTRSSGIFEILPSHLICDFDFDPCGY 242
             +EICMT L+   A  FF+     ++ D +  +MT  +GI EI P+  ICDF FDPCGY
Sbjct: 181 FTMEICMTELDPILARKFFRPPGDGKTGDSAGKEMTELTGINEINPNAFICDFAFDPCGY 240

Query: 243 SMNGIEGTAFSTVHVTPEDGFSYASYEVMGLEPSQVKLTTLVKRVVNCFGPSEFSIAVTC 302
           SMNG++   +ST+HVTPEDGFSYAS+E +G       +  ++++VV  F P   SI++TC
Sbjct: 241 SMNGMDDDWYSTIHVTPEDGFSYASFECVG--SVNDNIVHVLRKVVQIFRPGTMSISMTC 298

Query: 303 HGGADKWWPNECDDVD--GYSRRSMVEQELVSGGGRVVVYMTYEMKDKG 349
              +++      + V+  G   RS       +    +VV+ T+  + + 
Sbjct: 299 SNYSNEMLKKMVNAVEPLGLKCRSRAVDRFPAAD--MVVFQTFTARRRN 345


>IMGA|Medtr2g026090.1 S-adenosylmethionine decarboxylase
           chr02_pseudomolecule_IMGAG_V3 7061157-7059737 E
           EGN_Mt090430 20090702
          Length = 351

 Score =  217 bits (552), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 181/311 (58%), Gaps = 21/311 (6%)

Query: 14  GFEGFEKRLEITF--NEPPIFKDPT---GRGLRALTRSQLDSILEPACCTIVTQLSNSEF 68
           GFEGFEKRLE+ F  ++P    +PT     GLR L    +  IL+   CT+V+ + NS F
Sbjct: 5   GFEGFEKRLELHFFGDDP----NPTINHQLGLRKLEFESIQQILQAVQCTVVSAVGNSYF 60

Query: 69  DSYVLSESSLFVFPFKIVLKTCGTTXXXXXXXXXXXXXXXXXXXXFD-VNYSRGSFIFPN 127
           D+YVLSESSLFV+P KI++KTCGTT                       V+Y+RGSFIFPN
Sbjct: 61  DAYVLSESSLFVYPTKIIIKTCGTTQLLKSIIPLIYFANTHLNFTLSSVSYTRGSFIFPN 120

Query: 128 YQPAPHRSFSEEVTAL-NEFFGHLKTEAYVLGGSSAPNWNWHIYSASSGSSQPLMKDHTD 186
            QP PH SF+EEV+ L N    +L      +  S + + +WH+++A+     P      +
Sbjct: 121 SQPFPHTSFNEEVSYLENTIPSNLCFRKASIMPSKSSSHSWHVFTATQN---PHHHIPYE 177

Query: 187 TLNVEICMTGLEKKKAAVFFKR-----SADYSASDMTRSSGIFEILPSHLICDFDFDPCG 241
              +EICMT L+   A  FF+R     S + S + MT  +GI EI     ICDF FDPCG
Sbjct: 178 QYTMEICMTELDPILAGKFFRRPDEEKSGNSSGNQMTELTGINEINKEAFICDFAFDPCG 237

Query: 242 YSMNGIEGTAFSTVHVTPEDGFSYASYEVMG-LEPSQVKLTTLVKRVVNCFGPSEFSIAV 300
           YSMNG++G  +ST+HVTPEDG+SYAS+E +G +  +   +  ++++VV  F P   S+++
Sbjct: 238 YSMNGMDGECYSTIHVTPEDGYSYASFECVGSISDNDDNIVHMLRKVVQIFRPGTMSVSI 297

Query: 301 -TCHGGADKWW 310
            TC    ++ W
Sbjct: 298 TTCSEYNNEVW 308