Jatropha Genome Database

JcCB0058681.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058681.20 + phase: 0 /TE/partial
         (85 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H...    83   3e-17
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t...    63   3e-11
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t...    63   4e-11
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    61   2e-10
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy...    58   1e-09
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H...    58   1e-09
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H...    57   2e-09
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H...    57   2e-09
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy...    57   3e-09
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H...    54   2e-08
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy...    51   1e-07
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    51   1e-07
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy...    49   5e-07
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra...    47   3e-06

>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
          fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
          EGN_Mt090430 20090702
          Length = 563

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 51/80 (63%)

Query: 6  RCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGCICH 65
          R +L E+++P  FW  A   A +ILNR  T  MK K PEE WS  KP++   +VFG I +
Sbjct: 3  RSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSIFY 62

Query: 66 VHIPDARRTKLEDKSFKAVL 85
           H+PD+RR KLEDK+   +L
Sbjct: 63 KHVPDSRRKKLEDKTEAMIL 82


>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold AC235005.1 3152-790 H
           EGN_Mt090430 20090702
          Length = 772

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 50/83 (60%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P +FW  A   AV ++NR  T+ ++ ++P +      P+V  F+VFGC
Sbjct: 676 NIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGC 735

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C+     + RTKLE ++ K+V 
Sbjct: 736 LCYASSLQSHRTKLETRARKSVF 758


>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold AC235009.1 5302-2150 H
           EGN_Mt090430 20090702
          Length = 1051

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 50/83 (60%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P +FW  A   AV ++NR  T+ ++ ++P +      P+V  F+VFGC
Sbjct: 676 NIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGC 735

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C+     + RTKLE ++ K+V 
Sbjct: 736 LCYASSLQSHRTKLETRARKSVF 758


>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
           EGN_Mt090430 20090702
          Length = 1275

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 47/83 (56%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P  FW  A   AV ++NR ST  +  ++P        P++D F+VFGC
Sbjct: 505 NVVRALLFQSKLPPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGC 564

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C+       RTKL+ ++ K++ 
Sbjct: 565 LCYASTLQNHRTKLQSRARKSIF 587


>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
           EGN_Mt090430 20090702
          Length = 1413

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P ++W  A   A+ I+NR ++  +  K+P +   G  P+V  F+VFG 
Sbjct: 648 NVGRALLFQSKLPSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQTFKVFGS 707

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C+     + RTKL  ++ K V 
Sbjct: 708 LCYSTTLQSHRTKLSARARKTVF 730


>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
           EGN_Mt090430 20090702
          Length = 772

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P  FW  A   AV ++N+  T   K K+P +      P+++ F+VFGC
Sbjct: 687 NVARALLFQSKLPNFFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGC 746

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C      A+R+KL+ ++ K++ 
Sbjct: 747 LCFASTLLAQRSKLQSRARKSIF 769


>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
           EGN_Mt090430 20090702
          Length = 710

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 46/83 (55%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P +FW  A   AV ++NR  T  +   +P        P++  F+VFGC
Sbjct: 57  NIGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDITTFKVFGC 116

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C+     + RTKLE ++ K+V 
Sbjct: 117 LCYASSLQSHRTKLETRARKSVF 139


>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
           EGN_Mt090430 20090702
          Length = 883

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++PK FW  +   A++I+NR  T  ++ K+P     G  P+++ F+VFGC
Sbjct: 629 NVARALLFQSKLPKVFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGC 688

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           + +       RTK + ++ K V 
Sbjct: 689 LSYASTLHNHRTKFDSRAQKCVF 711


>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
           EGN_Mt090430 20090702
          Length = 920

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++PK FW  +   A++I+NR  T  ++ K+P     G  P+++ F+VFGC
Sbjct: 699 NVARALLFQSKLPKIFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGC 758

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           + +       RTK + ++ K V 
Sbjct: 759 LSYASTLHNHRTKFDSRAQKCVF 781


>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
           EGN_Mt090430 20090702
          Length = 479

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P +FW  A   AV ++NR +T  +   +P        P++  F+VFGC
Sbjct: 150 NIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKVFGC 209

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C+     +  TKLE ++ K+V 
Sbjct: 210 LCYASSLQSHITKLETRARKSVF 232


>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
           EGN_Mt090430 20090702
          Length = 790

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 42/80 (52%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R L+ + ++PKNFW  A   AV+++NR  T  +  K+  E      P++   +VFGC
Sbjct: 701 NISRALMFQSKLPKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGC 760

Query: 63  ICHVHIPDARRTKLEDKSFK 82
           + +       R K + K+ K
Sbjct: 761 LSYASTLPVNRYKFDPKARK 780


>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
           EGN_Mt090430 20090702
          Length = 1414

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 45/83 (54%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P  +W  A + AV ++NR  T  +  ++P        P+   F+VFGC
Sbjct: 665 NVGRALLYQSKLPPAYWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGC 724

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C+     +  TKL+ ++ K++ 
Sbjct: 725 LCYASTLQSHTTKLKHRARKSIF 747


>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
           EGN_Mt090430 20090702
          Length = 945

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R LL + ++P ++W  A   A  I+NR ++  +  K+P +      P    F+VFG 
Sbjct: 656 NVGRALLYQSKLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVFGS 715

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           +C+     + RTKL  ++ K+V 
Sbjct: 716 LCYSTTLHSHRTKLSARARKSVF 738


>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
           EGN_Mt090430 20090702
          Length = 753

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 21  EAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGCICHVHIPDARRTKLEDKS 80
           E  +  V ++NR  T+ ++ K+P +      P+++ F+VFGC+C+     + RTKL+ ++
Sbjct: 592 ETPQHNVFLINRVPTLVLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSRA 651

Query: 81  FKAVL 85
            K+V 
Sbjct: 652 RKSVF 656