Jatropha Genome Database

JcCB0058551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058551.10 - phase: 0 
         (131 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g091670.1 TolB, C-terminal chr02_pseudomolecule_IMGAG...    65   1e-11

>IMGA|Medtr2g091670.1 TolB, C-terminal chr02_pseudomolecule_IMGAG_V3
           20714926-20709847 E EGN_Mt090430 20090702
          Length = 493

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 7/93 (7%)

Query: 26  PSTASPAKIVSGYFSNAVSAFMKWLWSLKATTKTAITGRPTMKFESGYTVETVFDGSKLG 85
           P+ A+PA    G     +S+ +KW  S  ATTKT  +    ++FE+GY VETV +G+++G
Sbjct: 28  PTHAAPA----GPLIKHLSSLIKWTRS--ATTKTPHSDGNVLQFENGYVVETVVEGNEIG 81

Query: 86  IEPYSVEVL-PGGELLILDSANSNIYRISSSLS 117
           + PY + V    GEL  +D  NSNI RI+  LS
Sbjct: 82  VIPYRIRVSEEDGELFAVDEINSNIVRITPPLS 114