Jatropha Genome Database

JcCB0058331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058331.10 + phase: 0 /partial
         (91 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g023340.1 Aminoacyl-tRNA synthetase, class 1a, antico...    65   1e-11

>IMGA|Medtr1g023340.1 Aminoacyl-tRNA synthetase, class 1a,
           anticodon-binding; ; chr01_pseudomolecule_IMGAG_V3
           5142088-5136592 E EGN_Mt090430 20090702
          Length = 498

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 38/60 (63%), Gaps = 21/60 (35%)

Query: 1   MRIIAIALSPVAPSLSWRIYAQLGYSQDHFNSITWSETKWGGLKGGQVMAQPKPVFARIE 60
           +RIIAIALSPV PSL+                     TKWGGL+GGQVMAQP+PVFARIE
Sbjct: 432 VRIIAIALSPVTPSLN---------------------TKWGGLEGGQVMAQPQPVFARIE 470