Jatropha Genome Database
- JcCB0057861.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0057861.10 - phase: 1 /TE/partial
(1102 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 419 e-117
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 418 e-117
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 417 e-116
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 404 e-113
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 293 5e-79
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 246 4e-65
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 238 1e-62
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 223 4e-58
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 210 3e-54
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 179 9e-45
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 162 8e-40
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 140 4e-33
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 132 1e-30
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 110 5e-24
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 101 3e-21
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 97 4e-20
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 94 4e-19
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 84 4e-16
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 74 4e-13
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 74 4e-13
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 72 1e-12
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 64 3e-10
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 63 8e-10
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 61 2e-09
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 61 4e-09
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 60 4e-09
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 60 4e-09
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 59 1e-08
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 59 1e-08
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 59 1e-08
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 57 5e-08
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 56 1e-07
IMGA|Medtr3g148550.1 Cyclin-like F-box; F-box protein interactio... 52 2e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/496 (45%), Positives = 302/496 (60%), Gaps = 1/496 (0%)
Query: 603 PHTVAQARKNPRWCSAMEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDK 662
P T +A K+ W AM+ E AL + TWD+V + C+W+++ K A G I++
Sbjct: 739 PTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIER 798
Query: 663 YKARLVAKGFTQQSGIDYHSTFSPVVKPATIRLILTLAAKFQWPLHQLDVNNAFLQGKLE 722
YKARLVAKG+TQ G+DY T+SPV K T+RL++ LA+ W LHQLDVNNAFL G+L+
Sbjct: 799 YKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGELQ 858
Query: 723 DEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGFHESKSNSSLF 782
++VYM P G I+ P+ VCKLKK++YGL+QA R WY L + L+ + ++ S+ SLF
Sbjct: 859 EDVYMILPPG-INIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSLF 917
Query: 783 LLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPE 842
+ S + +LVYVDDII+ G S ++ + L F +KDLGQL YFLG+EV H
Sbjct: 918 IKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAHSKL 977
Query: 843 GIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYREAVGKLQYLS 902
GI L KY D+L IS+P + L + + D YR VG+L YL+
Sbjct: 978 GISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLVGRLLYLN 1037
Query: 903 FTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYVYTNAD 962
TRPDI+F+ + SQF+ P+I H A R RY+K GLF R + L +++AD
Sbjct: 1038 NTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDAD 1097
Query: 963 WAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLE 1022
WAG R S +G FLG+S ISW +KKQ TV+RSS+EAEYRA+ASA E WL LL
Sbjct: 1098 WAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLYLLN 1157
Query: 1023 ELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIVHHIHSVD 1082
+L IT K P+LYCDN A ++ NPVFH R KH+ ID H VRE++ + + + S D
Sbjct: 1158 DLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVSSQD 1217
Query: 1083 QLADSLTKAQTLQLFS 1098
Q+AD TKA + FS
Sbjct: 1218 QIADFFTKALLPKTFS 1233
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/506 (44%), Positives = 307/506 (60%), Gaps = 1/506 (0%)
Query: 593 YLVVANTPSLPHTVAQARKNPRWCSAMEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRT 652
Y++ +T + P T A+A K+ W AM+ E AL + TW+ V + + C+W+F+
Sbjct: 857 YVLSLHTHNEPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKI 916
Query: 653 KFKAYGEIDKYKARLVAKGFTQQSGIDYHSTFSPVVKPATIRLILTLAAKFQWPLHQLDV 712
K A G I++YKARLVAKG+TQ G+DY TFSPV K T+RLI+ LA+ W LHQLDV
Sbjct: 917 KRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDV 976
Query: 713 NNAFLQGKLEDEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGF 772
NNAFL G L++ VYM P G I N VCKL K++YGL+QA R WY L + LL + +
Sbjct: 977 NNAFLHGDLQENVYMTLPPG-ISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQY 1035
Query: 773 HESKSNSSLFLLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYF 832
++ S+ SLF T+ +LVYVDDII+ G+S ++ + L F +KDLGQL +F
Sbjct: 1036 TQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFF 1095
Query: 833 LGVEVLHQPEGIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYR 892
LG+EV H GI L KY D+L S+P + L + D YR
Sbjct: 1096 LGLEVAHSQLGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYR 1155
Query: 893 EAVGKLQYLSFTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPA 952
+G+L YL+ TRPDI+++ + SQF+ P+ TH A R+ RY+K GLF R
Sbjct: 1156 RLIGRLLYLNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSP 1215
Query: 953 SQLYVYTNADWAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVA 1012
QL Y++ADWAG R S SG FLG+S ISW +KKQ TV+RSS+EAEYRA+ASA
Sbjct: 1216 LQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATC 1275
Query: 1013 ETNWLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKK 1072
E WL LL++L +T K+P+L+CDN A ++ NPVFH R KH+ ID H VRE++HS
Sbjct: 1276 ELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGI 1335
Query: 1073 QIVHHIHSVDQLADSLTKAQTLQLFS 1098
+ + S +Q+AD TK+ Q F+
Sbjct: 1336 LKLLPVSSKEQVADFFTKSLHPQPFN 1361
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/499 (44%), Positives = 306/499 (61%), Gaps = 1/499 (0%)
Query: 593 YLVVANTPSLPHTVAQARKNPRWCSAMEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRT 652
+++ +T P + A+A K W AM+ E AL + TW LV + + C+W+++
Sbjct: 883 FVMSLHTQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKV 942
Query: 653 KFKAYGEIDKYKARLVAKGFTQQSGIDYHSTFSPVVKPATIRLILTLAAKFQWPLHQLDV 712
KF A G +++YKARLVAKG+ Q G+DY T+SPV K T+RL++ L++ W LHQLDV
Sbjct: 943 KFHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDV 1002
Query: 713 NNAFLQGKLEDEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGF 772
NNAFL G L+++VYM P G I N VCKL K++YGL+QA R WY L + L +
Sbjct: 1003 NNAFLHGDLQEDVYMMVPPG-IKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHY 1061
Query: 773 HESKSNSSLFLLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYF 832
++ S+ SLF+ ST+ +LVYVDDII+ GNS S +H+ + L + F +KDLGQL YF
Sbjct: 1062 TQATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYF 1121
Query: 833 LGVEVLHQPEGIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYR 892
LG+EV H GI L KY D+L IS+P + L L+ S D R
Sbjct: 1122 LGIEVAHSKLGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACR 1181
Query: 893 EAVGKLQYLSFTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPA 952
VG+L YL+ TRPDI+F+ + SQF+ P+ H A R+ +Y+K GLF R+ +
Sbjct: 1182 RLVGRLLYLNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSS 1241
Query: 953 SQLYVYTNADWAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVA 1012
L +++ADWAG R S SG FLG+S ISW +KKQ TV++SS+EAEYRA+ASA
Sbjct: 1242 LNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATC 1301
Query: 1013 ETNWLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKK 1072
E W+ LL++L T K+P+LYCDN A ++ NPVFH R KH+ ID H +R+++ S
Sbjct: 1302 ELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGV 1361
Query: 1073 QIVHHIHSVDQLADSLTKA 1091
+ + S DQ+AD TKA
Sbjct: 1362 LKLLTVSSQDQVADFFTKA 1380
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/495 (44%), Positives = 297/495 (60%), Gaps = 1/495 (0%)
Query: 603 PHTVAQARKNPRWCSAMEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDK 662
P T A+A K W AM+ E +AL TW LV + + C+W+++ K A G I++
Sbjct: 884 PTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHADGSIER 943
Query: 663 YKARLVAKGFTQQSGIDYHSTFSPVVKPATIRLILTLAAKFQWPLHQLDVNNAFLQGKLE 722
YKARLVAKG+ Q G+DY T+SPV K T+R I+ LA W +HQLDVNNAFL G L+
Sbjct: 944 YKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGDLQ 1003
Query: 723 DEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGFHESKSNSSLF 782
++VYM P+G I P N VCKL K++YGL+QA R WY L + L+ + + +S S+ SLF
Sbjct: 1004 EDVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSDHSLF 1062
Query: 783 LLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPE 842
+ T+ +LVYVDD+IITG S S + L + +KDLGQL YFLG+EV H +
Sbjct: 1063 IKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVAHSSQ 1122
Query: 843 GIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYREAVGKLQYLS 902
GI L KY D+L S+P + L + G D YR +G+L YL+
Sbjct: 1123 GISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLIGRLIYLT 1182
Query: 903 FTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYVYTNAD 962
TRP I+F + SQF+++P+ H+ A R+ RY+K + GLF R + L Y++AD
Sbjct: 1183 NTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGYSDAD 1242
Query: 963 WAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLE 1022
WAG R S SG FLG S ISW +KKQ TV+RSS+EAEYRA+ +A E WL LL
Sbjct: 1243 WAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLLYLLH 1302
Query: 1023 ELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIVHHIHSVD 1082
+L +T+ K+ +LYCDN A ++ NPVFH R KH+ ID H VRE++ + + + S D
Sbjct: 1303 DLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPVTSAD 1362
Query: 1083 QLADSLTKAQTLQLF 1097
QLAD TK Q F
Sbjct: 1363 QLADFFTKPLLPQPF 1377
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 293 bits (749), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 212/347 (61%), Gaps = 5/347 (1%)
Query: 603 PHTVAQARKNPRWCSAMEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDK 662
P++ +A +P W AM +E+ AL N TW L V C+W+++ K KA G +++
Sbjct: 336 PNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVER 395
Query: 663 YKARLVAKGFTQQSGIDYHSTFSPVVKPATIRLILTLAAKFQWPLHQLDVNNAFLQGKLE 722
YKARLV KG+TQ GIDY TFSPVVK T+R ++ AAK QW +HQLDVNNAFL G L
Sbjct: 396 YKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLH 455
Query: 723 DEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGFHESKSNSSLF 782
+EVYM P G P + VCKL K++YGL+QA R WY L L + G+ S + SLF
Sbjct: 456 EEVYMDIPPGLATP-HKDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLF 514
Query: 783 LLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPE 842
+ + +++ VYVDDI++TG + + + L N F +KDLG+LHYFLG+EVL++ +
Sbjct: 515 YKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKDD 574
Query: 843 GIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKI--DAQQYREAVGKLQY 900
GI +S K++ D+L+++N +SSP+ P + L GK+ D YR+ +GKL +
Sbjct: 575 GILVSQRKFVLDLLKEFNCDHMAPLSSPLD--PNIKLRSHEGKVLDDPTYYRKLIGKLNF 632
Query: 901 LSFTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFL 947
L+ TR D+++ V SQ+M P H A + RY+K G+F+
Sbjct: 633 LTHTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFM 679
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 246 bits (629), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 181/295 (61%), Gaps = 5/295 (1%)
Query: 619 MEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDKYKARLVAKGFTQQSGI 678
M+ E AL + TW +V + + C+W+F+ K G I++YKARLVAKG+ Q G+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 679 DYHSTFSPVVKPATIRLILTLAAKFQWPLHQLDVNNAFLQGKLEDEVYMRQPKGFIHPDF 738
DY T+SPV K T+R I+ LA+ W LHQ DVNNAFL G+L+++VYM P G H
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPH-SH 119
Query: 739 PNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGFHESKSNSSLFLLHKSTAMLYILVYVD 798
+ VCKL K++YGL+QA WY L N L+S G+ ++ S++SLF+ H ++ +LVYVD
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 799 DIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPEGIYLSHSKYIFDILQK 858
D+I+ G++ S + L + F +KD+GQL YFLG+EV H GI L KY D+L+
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLED 239
Query: 859 YNMQDCHCISSPMSITPLLTLNDGSGKI--DAQQYREAVGKLQYLSFTRPDISFV 911
+ +++P P + L++ S D YR +G+L YL+ TRPDI+++
Sbjct: 240 SGLTGSKPMNTPSD--PSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDITYI 292
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 189/347 (54%), Gaps = 34/347 (9%)
Query: 752 LRQAPRAWYMALKNFLLSYGFHESKSNSSLFLLHKSTAMLYILVYVDDIIITGNSNSALT 811
+R A R WY L + L+++G+ ++ ++ SLF+ H +T +LVYVDDII+ GNS T
Sbjct: 382 IRLASRKWYEKLASLLVNHGYKQASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFT 441
Query: 812 HVINALSNHFSLKDLGQLHYFLGVEVLHQPEGIYLSHSKYIFDILQKYNMQDCHCISSPM 871
+ N L N F +KDLGQL YFLG+EV H GI L KY D+L + D +++P
Sbjct: 442 FIKNILHNSFKIKDLGQLKYFLGLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPS 501
Query: 872 SITPLLTLNDGSGKIDAQQYREAVGKLQYLSFTRPDISFVVNKXSQFMHTPSITHWQAVK 931
+ L +D D YR VG+L YL+ TRPDI+F+ + SQF+ P+ TH+ A
Sbjct: 502 DPSIKLYHDDSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAAL 561
Query: 932 RLFRYVKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDRTSTSGYITFLGSSPISWSSKK 991
R+ RY+K GL R+ + Y++ADWAG R S SG FLG S ISW +KK
Sbjct: 562 RVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKK 621
Query: 992 QHTVARSSTEAEYRAVASAVAETNWLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFH 1051
Q TV+RSS+EAEYRA+ +A + NPVFH
Sbjct: 622 QLTVSRSSSEAEYRALGAATS----------------------------------NPVFH 647
Query: 1052 SRMKHIAIDFHFVREQVHSKKQIVHHIHSVDQLADSLTKAQTLQLFS 1098
R KH+ ID H VRE++ + + I S +QLAD TK+ Q F+
Sbjct: 648 ERTKHLEIDCHIVREKLAAGIMKLLPISSKNQLADCFTKSILPQPFN 694
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 9/161 (5%)
Query: 568 LFHCCNLVSQHDLSIIFSKPMKIFDYLVVANTPSLPHTVAQARKNPRWCSAMEEEYNALI 627
L+ N VS H++S S +++ + + P T +A K W AM+ E AL
Sbjct: 263 LYSISNYVSYHNISNPHSH------FILSLHAHNEPKTYTEANKFECWRQAMQVELTALE 316
Query: 628 RNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDKYKARLVAKGFTQQSGIDYHSTFSPV 687
TW ++ + + C+W+++ K A I++YKARLVAKG+ Q G+DY T+SPV
Sbjct: 317 NTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIERYKARLVAKGYNQVEGLDYFDTYSPV 376
Query: 688 VKPATIRLILTLAAKFQWPLHQLDVNNAFLQGKLEDEVYMR 728
K TIRL + K+ L L VN+ + Q + ++++
Sbjct: 377 AKHTTIRLA---SRKWYEKLASLLVNHGYKQASADHSLFIK 414
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 223 bits (568), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 171/309 (55%), Gaps = 14/309 (4%)
Query: 791 LYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPEGIYLSHSK 850
+ +L+YVDD++I GN +T+ L F +KDLG L YFLG+E+ G+++ K
Sbjct: 1 MAVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRK 60
Query: 851 YIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYREAVGKLQYLSFTRPDISF 910
Y DIL + M DC + PM L L+ G D +YR + +L YL+ P+I++
Sbjct: 61 YTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITY 120
Query: 911 VVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDR 970
V H ++ R+ RY+K + G+ L + QL Y ++DWA P R
Sbjct: 121 SV-------HILTM-------RVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTR 166
Query: 971 TSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLEELQITSFK 1030
STSGY+ LGS+PISW +KKQ TV++SS+EAEYRA+ AV+E WL++LL LQ+
Sbjct: 167 RSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDS 226
Query: 1031 VPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIVHHIHSVDQLADSLTK 1090
+L CDN A +L NPV+H R KHI +D HF+R + ++ + Q AD TK
Sbjct: 227 PTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTK 286
Query: 1091 AQTLQLFSH 1099
A + F
Sbjct: 287 ALGAKQFQE 295
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 158/267 (59%), Gaps = 18/267 (6%)
Query: 781 LFLLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQ 840
+F H ++ +LVYVDDII+ GNS S H+ + L + F +KDLGQL Y LG+EV H
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 841 PEGIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKI---------DAQQY 891
+GI L KY D+L S ++ P+ T +D S K+ D Y
Sbjct: 61 KQGISLCQRKYCLDLLSD---------SGTINSKPVSTSSDASLKLHNDSSPPYEDIPSY 111
Query: 892 REAVGKLQYLSFTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTP 951
R +G+L YL+ TRPDI+F+ + SQF+ P+ TH A R+ +Y+K GLF R
Sbjct: 112 RRLIGRLLYLNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNS 171
Query: 952 ASQLYVYTNADWAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAV 1011
+ L +++ DWAG R S SG F+G+S ISW +KKQ TV+RSS+EAEYRA+ASA
Sbjct: 172 SLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASAT 231
Query: 1012 AETNWLQNLLEELQITSFKVPILYCDN 1038
E W+ LL++L I S K+P+L+CDN
Sbjct: 232 CELQWILYLLKDLNIQSSKLPVLFCDN 258
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 179 bits (453), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 130/466 (27%), Positives = 189/466 (40%), Gaps = 122/466 (26%)
Query: 603 PHTVAQARKNPRWCSAMEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDK 662
P + QA+ +PRW AM E +AL T W+F
Sbjct: 153 PSSFKQAQSDPRWQLAMSPELSALEATGT----------------WIF------------ 184
Query: 663 YKARLVAKGFTQQSGIDYHSTFSPVVKPATIRLILTLAAKFQWPLHQLDVNNAFLQGKLE 722
+D SP+ +W D NN FL G L+
Sbjct: 185 ---------------VDPPPNISPIGS--------------KWIFRLNDANNTFLHGDLQ 215
Query: 723 DEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGFHESKSNSSLF 782
++VYM P+G + P P VCKL K++YGL+QA R W+ L + LL+ GF ++ ++ S
Sbjct: 216 EDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASADHSFL 274
Query: 783 LLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPE 842
+ T+ +L+YV H +
Sbjct: 275 IRASPTSFTALLIYV----------------------------------------AHSSK 294
Query: 843 GIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYREAVGKLQYLS 902
GI L KY D+L + C +S+P+ LL ++DG D YR +G L YL+
Sbjct: 295 GISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDDVLAYRCLIGCLLYLT 354
Query: 903 FTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYVYTNAD 962
TRPDISF + SQFM PS+ H + + RY++ GLF RT QL +++AD
Sbjct: 355 TTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLLGFSDAD 414
Query: 963 WAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLE 1022
W G R S + F EA +R + + +
Sbjct: 415 WGGCVDSRRS----LAF--------------------QEAIHRFLFFLRSGISCFSISHP 450
Query: 1023 ELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQV 1068
+ ++ ILYCDN A ++ NPVF+ R KH+ ID H VRE+V
Sbjct: 451 RTPMAHIRLSILYCDNQSALHIAANPVFYERTKHLDIDCHIVREKV 496
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 162 bits (410), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 181/357 (50%), Gaps = 48/357 (13%)
Query: 718 QGKLEDEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGFHESKS 777
+ +L V++++ +GF D+ V KL KA+YGL+QAPRAW ++ F + GF + +
Sbjct: 245 KARLVARVFLKK-EGF---DYTEVVFKLNKALYGLKQAPRAWNKRIEKFFVEQGFKKCLA 300
Query: 778 NSSLFLLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEV 837
++ + G+ ++L + +E+
Sbjct: 301 EHGVY-------------------VKGSEGTSL--------------------LIICLEI 321
Query: 838 LHQPEGIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYREAVGK 897
L +G+ L+ +KY +I +K+NM D + + + + + +D R +G
Sbjct: 322 LRTTKGLILNQTKYDTEIQKKFNMLDFNSSITLAYANNINEVKEEDKGVDPTILRRLIGL 381
Query: 898 LQYLSFTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHG-LFLRRTPASQLY 956
L+YL +R DIS+ V S+FM P TH+ A K++ RY+ T+ +G LF QL
Sbjct: 382 LRYLCQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLS 441
Query: 957 V--YTNADWAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAET 1014
+ Y++ADW D DR T+ ++ L +PISWSSKKQ VA SS E EY +SA +
Sbjct: 442 MIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQA 501
Query: 1015 NWLQNLLEELQITSFKVPI-LYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHS 1070
NWLQN+LE+ I K PI L DN A L +N + H + KHI FH++R+QV+
Sbjct: 502 NWLQNVLEQSMI-KLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLRDQVNK 557
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 628 RNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDKYKARLVAKGFTQQSGIDY 680
+NQTW+L+ + +D KW+F+ K G+I K+KARLVA+ F ++ G DY
Sbjct: 209 KNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGFDY 261
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 140 bits (352), Expect = 4e-33, Method: Composition-based stats.
Identities = 92/251 (36%), Positives = 134/251 (53%), Gaps = 33/251 (13%)
Query: 793 ILVYVDDIIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPEG-IYLSHSKY 851
++VYV D+I+TGN+ L +++ L++ FSLKDLG L YFLG+EV Q G + ++ SKY
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKY 60
Query: 852 IFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKI-DAQQYREAVGKLQYLSFTRPDISF 910
+ D+L K +MQ+ + SPM I+ L DGS D R V LQY + P
Sbjct: 61 VRDLLAKTDMQEAKSLPSPM-ISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP---- 115
Query: 911 VVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYV--YTNADWAGDPT 968
+ + R++K T+ GL +R P L + Y +ADW DP
Sbjct: 116 -------------------LSNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADWGSDPD 156
Query: 969 DRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLEELQITS 1028
DR+ + FLG + ISW +KKQ +ARSSTEAEY ++A A +E W++ L++
Sbjct: 157 DRSVDA--CVFLGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKTYGARLKVIQ 214
Query: 1029 FKVPILYCDNV 1039
K L+ NV
Sbjct: 215 KK---LFVSNV 222
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 573 NLVSQHDLSIIFSKPMKIFDYLVVANTPSLPHTVAQARKNPRWCSAMEEEYNALIRNQTW 632
N VS H++S S +++ + + P + +A K W AM+ E AL TW
Sbjct: 888 NFVSYHNISNSHSH------FILSLHAHTEPKSYTEANKFECWRQAMQVELTALENTGTW 941
Query: 633 DLVPFSYSYNVVDCKWLFRTKFKAYGEIDKYKARLVAKGFTQQSGIDYHSTFSPVVKPAT 692
++ + + C+W+++ K A G I++YKARLVAKG+ Q G+DY T+SPV K T
Sbjct: 942 KIIDLPSNAKPIGCRWIYKVKHHADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTT 1001
Query: 693 IRLILTLAAKFQWPLHQLDVNNAFLQGKLEDEVYMRQPKG 732
IRL+L LA+ W LHQLDVNNAFL G L+++VYM P G
Sbjct: 1002 IRLVLALASLNNWHLHQLDVNNAFLHGDLQEDVYMDIPPG 1041
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 87/167 (52%), Gaps = 15/167 (8%)
Query: 932 RLFRYVKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDRTSTSGYITFLGSSPISWSSKK 991
R+ Y+K GLF R + Q+ YTNADWA +G S +
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWA---------------VGCKDTRRSISE 46
Query: 992 QHTVARSSTEAEYRAVASAVAETNWLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFH 1051
Q SS+EAEYRA+ASA E L LL +L++ K P+LYCDN A Y+ NPVFH
Sbjct: 47 QCFFCWSSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFH 106
Query: 1052 SRMKHIAIDFHFVREQVHSKKQIVHHIHSVDQLADSLTKAQTLQLFS 1098
KH+ ID H VRE++ + + I S DQ+AD TK+ Q F+
Sbjct: 107 ECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFN 153
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Query: 727 MRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLSYGFHESKSNSSLFLLHK 786
M QP GF+HP PN VCKL+K++YGL+QAP+AW+ AL+ FLL Y F +KS++SLF+ K
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 787 STAMLYILVYVDDIIIT 803
+ Y LVYVDDI +T
Sbjct: 61 ANTFAYFLVYVDDIPLT 77
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 97.1 bits (240), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 72/142 (50%), Gaps = 28/142 (19%)
Query: 619 MEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDKYKARLVAKGFTQQSGI 678
M+ E AL TW LV + + C+W+++ K A G I +YKARLV KG+ Q G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 679 DYHSTFSPVVKPATIRLI----------------------------LTLAAKFQWPLHQL 710
DY T+SPV K T RL+ + LA+ QW +H+L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 711 DVNNAFLQGKLEDEVYMRQPKG 732
D N+AFL G L+++VYM P+G
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQG 142
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 64/102 (62%)
Query: 745 LKKAIYGLRQAPRAWYMALKNFLLSYGFHESKSNSSLFLLHKSTAMLYILVYVDDIIITG 804
L+K++YGL+QA R WY L L+ YGF ES ++ SLF + + + +L+YVDD++I G
Sbjct: 5 LRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLVIAG 64
Query: 805 NSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPEGIYL 846
N +T+ L F +KDLG L YFLG+E+ G+++
Sbjct: 65 NDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFM 106
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 60/97 (61%)
Query: 994 TVARSSTEAEYRAVASAVAETNWLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFHSR 1053
TV++SS+EAEYRA+A+ V E WL LL++ + +LYCD+ A ++ N FH R
Sbjct: 248 TVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHER 307
Query: 1054 MKHIAIDFHFVREQVHSKKQIVHHIHSVDQLADSLTK 1090
KHI +D H VRE++ K + + S QLAD LTK
Sbjct: 308 TKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTK 344
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Query: 835 VEVLHQPEGIYLSHSKYIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYREA 894
+E+L +G+ L + Y +IL+K+NM DC+ + + + + +D +R
Sbjct: 1 MEILINSKGLILHQTDYASEILKKFNMLDCNSTITHADANIIYEVKEEDEGVDPTMFRRL 60
Query: 895 VGKLQYLSFTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHG-LFLRRTPAS 953
+G L+YL +RP IS++V S+FM P T++ + K++ RY+ T+ +G LFL
Sbjct: 61 IGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATE 120
Query: 954 QLYV--YTNAD 962
QL + Y++AD
Sbjct: 121 QLDMEGYSDAD 131
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 52/89 (58%)
Query: 965 GDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLEEL 1024
GD D+ ST+ Y+ +G++PISWSSKKQ VA SS+EA+Y A + A + W++ LLEEL
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 1025 QITSFKVPILYCDNVGATYLCQNPVFHSR 1053
L DN A L P+ H +
Sbjct: 126 NAFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%)
Query: 800 IIITGNSNSALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPEGIYLSHSKYIFDILQKY 859
+II+G+ + + + L +HF +KDL L YFLG+E L + ++LS +KY D++ +
Sbjct: 1 MIISGDDSIGIEELKQFLCHHFEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQA 60
Query: 860 NMQDCHCISSPMSITPLLTLNDGSGKIDAQQYREAVGKLQYLSFTRPDISFVV 912
+ DC + + T DG+ DA Y VG L YL+ TRP+IS+ V
Sbjct: 61 GLTDCKIEYTRLEPNIQFTPQDGTLLDDATLYWHFVGSLIYLTNTRPNISYFV 113
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 963 WAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYR 1005
WAG P R ST+ Y FLGS+ ISW+SKKQ TV+RSSTEAEYR
Sbjct: 8 WAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSSTEAEYR 50
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 568 LFHCCNLVSQHDLSIIFSKPMKIFDYLVVANTPSLPHTVAQARKNPRWCSAMEEEYNALI 627
L+ N VS H++S S +++ + + P T +A K W AM+ E AL
Sbjct: 356 LYSISNYVSYHNISNPHSH------FILSLHAHNEPKTYTEANKFECWRQAMQVELTALE 409
Query: 628 RNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDKYKARLVAKGFTQ 674
TW ++ + + C+W+++ K A G I++YKARLVAKG+ Q
Sbjct: 410 NTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTIERYKARLVAKGYNQ 456
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 1034 LYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIVHHIHSVDQLADSLTKAQT 1093
L DN+ L +NP+ H R KHI + FH++REQV K + H S +Q+AD LTK
Sbjct: 27 LKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVK 86
Query: 1094 LQLFSHHR 1101
+++F+ R
Sbjct: 87 IEVFTKPR 94
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 619 MEEEYNALIRNQTWDLVPFSYSYNVVDCKWLFRTKFKAYGEIDKYKARLVAKGFTQQSGI 678
M + A+ W L S V+ CKW +R K K G I+++K L+ K +T+Q G+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 679 DYHSTFSPVVKPATIRLILTLAAKFQWPLHQLD 711
+ TFS V K + L+L++ L QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 1029 FKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIVHHIHSVDQLADSL 1088
F L DN+ L +NP+ H R KHI + FH++REQV K + H S +Q+AD L
Sbjct: 113 FIAVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVL 172
Query: 1089 TKAQTLQLFSHHR 1101
TK +++F+ R
Sbjct: 173 TKGVKIEVFTKPR 185
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 953 SQLYVYTNADWAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVA 1012
S+L Y+++D GD DR STSG + + ISW +K+Q A SS EAEY A A
Sbjct: 11 SKLEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGTFAAC 70
Query: 1013 ETNWLQNLLEEL 1024
+ WL N+++EL
Sbjct: 71 QAIWLDNVIKEL 82
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 1005 RAVASAVAETNWLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFV 1064
+A+A A +E W+ L++ I I+YCDN + ++ NPVFH R KHI ID H V
Sbjct: 2 QALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVV 61
Query: 1065 REQV 1068
R+++
Sbjct: 62 RDKI 65
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 32/38 (84%)
Query: 643 VVDCKWLFRTKFKAYGEIDKYKARLVAKGFTQQSGIDY 680
+V C+W+++ K+KA GEI+KYKARLVAKG+TQ G D+
Sbjct: 13 IVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 710 LDVNNAFLQGKLEDEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWY 760
+DV+NAFL G L+++VYM+ P+GF H VCKL+K+ Y L+ AP+ W+
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGF-HTSSSRLVCKLRKSQYVLKHAPQCWF 50
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 873 ITPLLTLNDGSGK-IDAQQYREAVGKLQYLSFTRPDISFVVNKXSQFMHTPSITHWQAVK 931
+T L +N+ + +D Q+R +G L+YL TRPD++ + SQFM ++H AVK
Sbjct: 12 VTSLSLINEQRKENVDFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQNLGVSHMIAVK 71
Query: 932 RLFRYVKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDRTSTSGYI 977
R+ Y+K + H + S + T T + S I
Sbjct: 72 RMLIYIKGKVEHAILFSNNDESNEDIGTQEKCLKRVTKQCMNSAVI 117
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 1023 ELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIVHHIHSVD 1082
EL+I L DN A L +N +FH + KH+ FHF+R+QV+ + IV + + D
Sbjct: 3 ELKIGDEVAVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQD 62
Query: 1083 QLADSLTKA 1091
QL D TKA
Sbjct: 63 QLTDLFTKA 71
>IMGA|Medtr3g148550.1 Cyclin-like F-box; F-box protein interaction
domain chr03_pseudomolecule_IMGAG_V3 38683285-38681571 E
EGN_Mt090430 20090702
Length = 455
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 658 GEIDKYKARLVAKGFTQQSGIDYHSTFSPVVKPATIRLILT 698
G I KYKARL+AK QQ GID+ T SP+VKP TI ++LT
Sbjct: 411 GSIYKYKARLLAKVLHQQGGIDFSETLSPLVKPTTICVVLT 451