Jatropha Genome Database

JcCB0053361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0053361.20 + phase: 0 /partial
         (169 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g103080.1 Phosphoribosyltransferase chr08_pseudomolec...   198   1e-51

>IMGA|Medtr8g103080.1 Phosphoribosyltransferase
           chr08_pseudomolecule_IMGAG_V3 22890648-22894795 E
           EGN_Mt090430 20090702
          Length = 396

 Score =  198 bits (503), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 114/140 (81%), Gaps = 7/140 (5%)

Query: 30  VRCNVVEPLNFDNGKPCVPLLSPSAQSFPSFLASNTDLESCIANKHYTRLRIFSGTANPA 89
           V+C++ E  N  NGKP VP+++   Q+ P F+ S   +     +++  +L++FSGTANPA
Sbjct: 37  VKCDMSEASNVVNGKPIVPVINE--QTLPKFMESEKTV-----SRNGNKLKLFSGTANPA 89

Query: 90  LSQEIACYMGLELGKIKIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMI 149
           LSQEIA YMGLELGKI  KRFADGEIYVQLQESVRGC+VYL+QPTCPPANENLMEL +MI
Sbjct: 90  LSQEIARYMGLELGKITTKRFADGEIYVQLQESVRGCNVYLIQPTCPPANENLMELQVMI 149

Query: 150 DACRRASAKNITAVIPYFGY 169
           DACRRASAKNITAVIPYFGY
Sbjct: 150 DACRRASAKNITAVIPYFGY 169