Jatropha Genome Database

JcCB0053231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0053231.10 - phase: 0 
         (275 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g108160.1 Carbonic anhydrase, eukaryotic chr07_pseudo...   251   2e-67

>IMGA|Medtr7g108160.1 Carbonic anhydrase, eukaryotic
           chr07_pseudomolecule_IMGAG_V3 25409160-25410839 E
           EGN_Mt090430 20090702
          Length = 270

 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/263 (46%), Positives = 176/263 (66%), Gaps = 6/263 (2%)

Query: 9   LFFTRFIFISLLLHTLPISSQEIEDEKDFDYYEGE-KGPSRWGELHPEWSACNNGSMQSP 67
           LF    + + L   +  +S+ +     +++Y +G+ KGP  WG L PEW  C NG +QSP
Sbjct: 5   LFSLVILLLILCSSSFLVSASDSGGGNEYNYKKGDSKGPENWGNLKPEWKLCGNGKLQSP 64

Query: 68  IDLLNERVEVVSHLGKLKREYKSSNATLKNRGHDMMMEWENGAGITEINGTEYILKQCHW 127
           ID+LN+RV+ +  LGKL+++YK   A LKNR +D+M++W+  AG   +NGT Y L QCHW
Sbjct: 65  IDILNKRVQELPQLGKLEKDYKLGPAFLKNRFNDVMLQWKGYAGKLNLNGTYYKLIQCHW 124

Query: 128 HSPSEHSVNGVRFALELHMVHESLDGKVAVIGVMYIIGRPDSFLSSVDKHLRSVAGTRKL 187
           H+PSEH++NG +F +E H VH++   ++AVIG+ Y IGRPD  LS +  H++S+   R  
Sbjct: 125 HTPSEHTLNGSKFDMEQHCVHQNSKDEIAVIGIWYKIGRPDPLLSKLLNHIKSI---RDK 181

Query: 188 QTVVGMVNPKSI-KLRSRKYYRYKGSLTVPPCTENVLWTIVTKVRTVSREQVRLLRVAVH 246
           +  VG++NP  I K    KYYRY GSLT PPCTE+V+WT++ KV+TVS EQ++ L+ AV+
Sbjct: 182 EIDVGIINPADIFKFGGTKYYRYIGSLTSPPCTEDVIWTVLKKVKTVSVEQLKALK-AVN 240

Query: 247 DESDTNARPIQLMNGRSVQLYKP 269
              + NARP Q ++GR V  Y P
Sbjct: 241 HGFEENARPTQDLDGRKVWFYNP 263