Jatropha Genome Database

JcCB0052901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052901.10 + phase: 0 /pseudo/partial
         (295 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g011170.1 Hydroxymethylglutaryl-coenzyme A synthase, ...   450   e-127
IMGA|Medtr5g011170.2 Hydroxymethylglutaryl-coenzyme A synthase, ...   449   e-127

>IMGA|Medtr5g011170.1 Hydroxymethylglutaryl-coenzyme A synthase,
           active site; chr05_pseudomolecule_IMGAG_V3
           2975550-2979927 E EGN_Mt090430 20090702
          Length = 471

 Score =  450 bits (1157), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 208/252 (82%), Positives = 224/252 (88%)

Query: 2   AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTVGLGQDCMAFCSEVEDVISMSLTAV 61
           A NVGILA+DIYFPP CVQQEALEAHDGASKGKYT+GLGQDCM+FCS+VEDVISMSLT V
Sbjct: 6   ANNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVV 65

Query: 62  SSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNACYGGT 121
           S+LL+KY IDPKQIGRLEVGSETVIDKSKSIK+FLMQIFEKYGNTD+EGVDSTNACYGGT
Sbjct: 66  STLLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGT 125

Query: 122 AALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXXXFESKF 181
           AAL NCVNWVESNSWDGRYGLVVCTDSAVYAEGPAR                   FESK 
Sbjct: 126 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKL 185

Query: 182 RGSHMSHTYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKNFCAKYEKFKGKQFSISDA 241
           RGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALD+C+KNFC KYEK +GKQFS+SDA
Sbjct: 186 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDA 245

Query: 242 EYFVFHSPYNKV 253
           +YFVFHSPYNK+
Sbjct: 246 DYFVFHSPYNKL 257


>IMGA|Medtr5g011170.2 Hydroxymethylglutaryl-coenzyme A synthase,
           active site; chr05_pseudomolecule_IMGAG_V3
           2975550-2979447 E EGN_Mt090430 20090702
          Length = 427

 Score =  449 bits (1156), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 208/252 (82%), Positives = 224/252 (88%)

Query: 2   AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTVGLGQDCMAFCSEVEDVISMSLTAV 61
           A NVGILA+DIYFPP CVQQEALEAHDGASKGKYT+GLGQDCM+FCS+VEDVISMSLT V
Sbjct: 6   ANNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVV 65

Query: 62  SSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNACYGGT 121
           S+LL+KY IDPKQIGRLEVGSETVIDKSKSIK+FLMQIFEKYGNTD+EGVDSTNACYGGT
Sbjct: 66  STLLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNACYGGT 125

Query: 122 AALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXXXFESKF 181
           AAL NCVNWVESNSWDGRYGLVVCTDSAVYAEGPAR                   FESK 
Sbjct: 126 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKL 185

Query: 182 RGSHMSHTYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKNFCAKYEKFKGKQFSISDA 241
           RGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALD+C+KNFC KYEK +GKQFS+SDA
Sbjct: 186 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQFSLSDA 245

Query: 242 EYFVFHSPYNKV 253
           +YFVFHSPYNK+
Sbjct: 246 DYFVFHSPYNKL 257