Jatropha Genome Database

JcCB0052881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052881.10 + phase: 0 /pseudo/partial
         (283 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g105990.1 Breast cancer type 2 susceptibility protein...   313   5e-86

>IMGA|Medtr3g105990.1 Breast cancer type 2 susceptibility protein
           chr03_pseudomolecule_IMGAG_V3 26625163-26623202 H
           EGN_Mt090430 20090702
          Length = 353

 Score =  313 bits (802), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 148/256 (57%), Positives = 198/256 (77%), Gaps = 1/256 (0%)

Query: 15  ATKQLDMDKAIKKALQDAGIQEREVTPFLRVRVVGLTSYHGKAVAKEGLITIWSPTEKQR 74
           A +Q  M+ +I+KAL+D+G+ +REVTPF+R+RVVGLT  + +    EG++TIW+PT+KQR
Sbjct: 81  ANRQSQMESSIEKALKDSGLGDREVTPFMRLRVVGLTYKNQRDKPTEGIVTIWNPTQKQR 140

Query: 75  NELVEGQAYAIAGLLPVNADSNTLYLQARGSTTKWEPLSPLAIKNFQPFFNPRVSVLMSN 134
            EL EG+AYAIA L+P  +DS+ L+LQ RGSTTKW PLS  A + F+PF N R S+ +S+
Sbjct: 141 QELSEGEAYAIAELIPSGSDSDVLHLQTRGSTTKWLPLSSNAKEQFKPFSNNRNSIPLSS 200

Query: 135 LGEVPLSSEFDIAAYVVYVGEVYTTAQWKKQWVFVTDCSI-SALWSEELSNSLLAISFCS 193
           L ++PLS+EFD+ A+VV+VG+VYT++Q KKQWVFVTD SI + L S++++++LLAI FCS
Sbjct: 201 LSDIPLSNEFDVVAFVVHVGKVYTSSQQKKQWVFVTDGSIMNGLQSQKVTDTLLAICFCS 260

Query: 194 PYIDDDSFTPINYNLEGSAVGFFNLIKKAKDQINHLWIAEATENSTYSFSFDSPICSHLK 253
           P  D DSF PIN+NL GS VGF NLIKK KD  NH+W+A+A E STY   FDSP CSHL+
Sbjct: 261 PLFDHDSFPPINHNLAGSTVGFCNLIKKEKDHTNHIWVADANEISTYYLKFDSPQCSHLR 320

Query: 254 IAAASAQSWGKTSSLV 269
            AA+S + W   SSL+
Sbjct: 321 NAASSVRRWASNSSLI 336